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Yipf6
Gene Detail
Symbol

Name
ID
Yipf6
Yip1 domain family, member 6
MGI:1925179
Synonyms
A430107J06Rik, MGC:59484
Feature Type
protein coding gene
Genetic Map
Chromosome X
43.19 cM, cytoband C2
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
ChrX:98936316-98949017 bp, + strand
From VEGA annotation of GRCm38

  12702 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:15501  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: Yip1/Yip4
Gene Tree: Yipf6

Human
homologs
Human Homolog YIPF6, Yip1 domain family, member 6
NCBI Gene ID 286451
neXtProt AC  NX_Q96EC8
Human Synonyms  FinGER6
Human Chr (Location)  Xq12; chrX:68498782-68537285 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Chemically induced (ENU)(1) Gene trapped(1) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous or hemizygous for an ENU-induced allele exhibit colitis and increased susceptibility to induced colitis with decreased Paneth and goblet cells.
 
Phenotype Images(5)
Interactions
Yipf6 interacts with 386 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process intestinal epithelial cell development
Component cis-Golgi network, endoplasmic reticulum, ...
Function identical protein binding
External Resources: FuncBase
Expression
cDNA source data(65)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(67) cDNA(67)
Microarray probesets(6)
Other database
links
VEGA Gene ModelOTTMUSG00000018060 (Evidence)
Ensembl Gene ModelENSMUSG00000047694 (Evidence)
Entrez Gene77929 (Evidence)
UniGene212290
DFCITC1579997, TC1611705, TC1746826, TC1669258
DoTSDT.101379075, DT.91298716, DT.101379076, DT.91383530
NIA Mouse Gene IndexU043773
Consensus CDS ProjectCCDS30296.1
International Mouse Knockout Project StatusYipf6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018060 VEGA Gene Model | MGI Sequence Detail 12702 C57BL/6J ±  kb
transcript OTTMUST00000043587 VEGA | MGI Sequence Detail 930 Not Applicable 
polypeptide OTTMUSP00000019587 VEGA | MGI Sequence Detail 236 Not Applicable 

For the selected sequences
All sequences(63) RefSeq(9) UniProt(5)
Polymorphisms
SNPs within 2kb(90 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR006977 Yip1 domain
Protein Ontology PR:000017536 protein YIPF6
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:187584 Brandl K, et al., Yip1 domain family, member 6 (Yipf6) mutation induces spontaneous intestinal inflammation in mice. Proc Natl Acad Sci U S A. 2012 Jul 31;109(31):12650-5
All references(34)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/18/2014
MGI 5.20
The Jackson Laboratory