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Lhfpl3 Gene Detail
Summary
  • Symbol
    Lhfpl3
  • Name
    lipoma HMGIC fusion partner-like 3
  • Synonyms
    A930031L14Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1925076
    NCBI Gene: 269629
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:22746059-23275597 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 10.07 cM, cytoband A3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    6540 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925076
protein coding gene Chr5:22746022-23275597 (.)
129S1/SvImJ MGP_129S1SvImJ_G0029328
protein coding gene Chr5:20315709-20898451 (+)
A/J MGP_AJ_G0029293
protein coding gene Chr5:19678984-20209296 (+)
AKR/J MGP_AKRJ_G0029244
protein coding gene Chr5:20439445-21009443 (+)
BALB/cJ MGP_BALBcJ_G0029305
protein coding gene Chr5:20141326-20694998 (+)
C3H/HeJ MGP_C3HHeJ_G0029024
protein coding gene Chr5:20527106-21081088 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029758
protein coding gene Chr5:21784174-22384982 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026996
protein coding gene Chr5:17676434-18206337 (+)
CAST/EiJ MGP_CASTEiJ_G0028436
protein coding gene Chr5:19819905-20382023 (+)
CBA/J MGP_CBAJ_G0028991
protein coding gene Chr5:22093279-22683566 (+)
DBA/2J MGP_DBA2J_G0029143
protein coding gene Chr5:19963684-20512587 (+)
FVB/NJ MGP_FVBNJ_G0029101
protein coding gene Chr5:19364943-19903253 (+)
LP/J MGP_LPJ_G0029227
protein coding gene Chr5:20721836-21289751 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029129
protein coding gene Chr5:23289749-23888871 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029791
protein coding gene Chr5:20032518-20616313 (+)
PWK/PhJ MGP_PWKPhJ_G0028159
protein coding gene Chr5:18995300-19555858 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027992
protein coding gene Chr5:19420715-19990349 (+)
WSB/EiJ MGP_WSBEiJ_G0028516
protein coding gene Chr5:20130375-20712411 (+)



Homology
more
  • Human Ortholog
    LHFPL3, LHFPL tetraspan subfamily member 3
  • Vertebrate Orthologs
    7
  • Human Ortholog
    LHFPL3, LHFPL tetraspan subfamily member 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    LHFPL4
  • Links
    NCBI Gene ID: 375612
    neXtProt AC: NX_Q86UP9
    UniProt: Q86UP9

  • Chr Location
    7q22.2-q22.3; chr7:104328656-104908558 (+)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    2
  • Gene trapped
    1
  • Radiation induced
    1
  • Spontaneous
    1
  • Targeted
    1
  • Genomic Mutations
    4 involving Lhfpl3
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000106379 Ensembl Gene Model | MGI Sequence Detail 529539 C57BL/6J ±  kb
transcript ENSMUST00000197992 Ensembl | MGI Sequence Detail 3115 Not Applicable  
polypeptide ENSMUSP00000143576 Ensembl | MGI Sequence Detail 228 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR019372 Lipoma HMGIC fusion partner-like protein
Molecular
Reagents
less
  • All nucleic 7
    cDNA 6
    Primer pair 1

    Microarray probesets 2
References
more
  • Summaries
    All 33
    Developmental Gene Expression 4
    Diseases 1
    Gene Ontology 1
    Phenotypes 12
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:241136 Zhao F, et al., Novel function of LHFPL2 in female and male distal reproductive tract development. Sci Rep. 2016 Mar 11;6:23037

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory