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6030468B19Rik Gene Detail
Summary
  • Symbol
    6030468B19Rik
  • Name
    RIKEN cDNA 6030468B19 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924977
    NCBI Gene: 77727
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:117797660-117807301 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 82.96 cM, cytoband E2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    21 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924977
protein coding gene Chr11:117797626-117807308 (+)
129S1/SvImJ MGP_129S1SvImJ_G0019451
protein coding gene Chr11:122078652-122089368 (+)
A/J MGP_AJ_G0019419
protein coding gene Chr11:116668109-116678329 (+)
AKR/J MGP_AKRJ_G0019389
protein coding gene Chr11:120218714-120230673 (+)
BALB/cJ MGP_BALBcJ_G0019394
protein coding gene Chr11:117040565-117050190 (+)
C3H/HeJ MGP_C3HHeJ_G0019200
protein coding gene Chr11:120497419-120512277 (+)
C57BL/6NJ MGP_C57BL6NJ_G0019843
protein coding gene Chr11:125805878-125815497 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017468
protein coding gene Chr11:113677058-113686956 (+)
CAST/EiJ MGP_CASTEiJ_G0018754
protein coding gene Chr11:121931617-121941046 (+)
CBA/J MGP_CBAJ_G0019171
protein coding gene Chr11:130760043-130769717 (+)
DBA/2J MGP_DBA2J_G0019283
protein coding gene Chr11:116069458-116079414 (+)
FVB/NJ MGP_FVBNJ_G0019275
protein coding gene Chr11:115689541-115699143 (+)
LP/J MGP_LPJ_G0019353
protein coding gene Chr11:122403948-122413960 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019308
protein coding gene Chr11:129720285-129729921 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0019882
protein coding gene Chr11:120865718-120879946 (+)
PWK/PhJ MGP_PWKPhJ_G0018520
protein coding gene Chr11:117425269-117435103 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018312
protein coding gene Chr11:120599033-120611415 (+)
WSB/EiJ MGP_WSBEiJ_G0018806
protein coding gene Chr11:120835985-120846898 (+)



Homology
more
  • Human Ortholog
    C17orf99, chromosome 17 open reading frame 99
  • Vertebrate Orthologs
    5
  • Human Ortholog
    C17orf99, chromosome 17 open reading frame 99
    Orthology source: HomoloGene, HGNC
  • Synonyms
    IL-40, UNQ464
  • Links
    NCBI Gene ID: 100141515
    neXtProt AC: NX_Q6UX52
    UniProt: Q6UX52

  • Chr Location
    chr17:78146035-78166283 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    5 phenotype references
No notable phenotype was detected in a high-throughput screen of homozygous null mice.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000025573 Ensembl Gene Model | MGI Sequence Detail 9642 C57BL/6J ±  kb
transcript ENSMUST00000106331 Ensembl | MGI Sequence Detail 1071 Not Applicable  
polypeptide ENSMUSP00000101938 Ensembl | MGI Sequence Detail 252 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 2
References
more
  • Summaries
    All 22
    Gene Ontology 3
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:251374 Catalan-Dibene J, et al., Identification of IL-40, a Novel B Cell-Associated Cytokine. J Immunol. 2017 Nov 1;199(9):3326-3335

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory