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Lcn9 Gene Detail
Summary
  • Symbol
    Lcn9
  • Name
    lipocalin 9
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924954
    NCBI Gene: 77704
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:25823153-25825537 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 18.15 cM, cytoband A3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    54 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924954
protein coding gene Chr2:25823087-25825546 (+)
129S1/SvImJ MGP_129S1SvImJ_G0025472
protein coding gene Chr2:23747756-23750140 (+)
A/J MGP_AJ_G0025449
protein coding gene Chr2:22832091-22834475 (+)
AKR/J MGP_AKRJ_G0025419
protein coding gene Chr2:23581804-23584188 (+)
BALB/cJ MGP_BALBcJ_G0025445
protein coding gene Chr2:22940907-22943291 (+)
C3H/HeJ MGP_C3HHeJ_G0025206
protein coding gene Chr2:23509436-23511820 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025889
protein coding gene Chr2:24501028-24503412 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023300
protein coding gene Chr2:21714472-21716822 (+)
CAST/EiJ MGP_CASTEiJ_G0024669
protein coding gene Chr2:23396912-23399297 (+)
CBA/J MGP_CBAJ_G0025184
protein coding gene Chr2:25338621-25341005 (+)
DBA/2J MGP_DBA2J_G0025317
protein coding gene Chr2:22662558-22664942 (+)
FVB/NJ MGP_FVBNJ_G0025279
protein coding gene Chr2:22400192-22402576 (+)
LP/J MGP_LPJ_G0025403
protein coding gene Chr2:23683846-23686230 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025310
protein coding gene Chr2:25514855-25517239 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025948
protein coding gene Chr2:23540390-23542740 (+)
PWK/PhJ MGP_PWKPhJ_G0024417
protein coding gene Chr2:22456216-22458601 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024217
protein coding gene Chr2:23658449-23660840 (+)
WSB/EiJ MGP_WSBEiJ_G0024738
protein coding gene Chr2:23604586-23606970 (+)



Homology
more
  • Human Ortholog
    LCN9, lipocalin 9
  • Vertebrate Orthologs
    7
  • Human Ortholog
    LCN9, lipocalin 9
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HEL129
  • Links
    NCBI Gene ID: 392399
    neXtProt AC: NX_Q8WX39
    UniProt: Q8WX39

  • Chr Location
    9q34.3; chr9:135663322-135670731 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000023210 Ensembl Gene Model | MGI Sequence Detail 2385 C57BL/6J ±  kb
transcript ENSMUST00000023978 Ensembl | MGI Sequence Detail 839 Not Applicable  
polypeptide ENSMUSP00000023978 Ensembl | MGI Sequence Detail 178 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 2
References
more
  • Summaries
    All 20
    Gene Ontology 2
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:92984 Suzuki K, et al., Molecular evolution of epididymal lipocalin genes localized on mouse chromosome 2. Gene. 2004 Sep 15;339:49-59

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
07/09/2019
MGI 6.14
The Jackson Laboratory