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C330007P06Rik Gene Detail
Summary
  • Symbol
    C330007P06Rik
  • Name
    RIKEN cDNA C330007P06 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924894
    NCBI Gene: 77644
  • Alliance
Location &
Maps
more
  • Sequence Map
    ChrX:36827551-36864303 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 21.23 cM, cytoband A2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    83 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924894
protein coding gene ChrX:36823737-36874111 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035625
protein coding gene ChrX:31751909-31810018 (-)
A/J MGP_AJ_G0035602
protein coding gene ChrX:31811006-31851977 (-)
AKR/J MGP_AKRJ_G0035535
protein coding gene ChrX:32535331-32577332 (-)
BALB/cJ MGP_BALBcJ_G0035595
protein coding gene ChrX:31555642-31596864 (-)
C3H/HeJ MGP_C3HHeJ_G0035313
protein coding gene ChrX:32071266-32123586 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036131
protein coding gene ChrX:32398864-32440959 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032993
protein coding gene ChrX:30042496-30094825 (-)
CAST/EiJ MGP_CASTEiJ_G0034603
protein coding gene ChrX:20223564-20272071 (-)
CBA/J MGP_CBAJ_G0035282
protein coding gene ChrX:33235141-33294674 (-)
DBA/2J MGP_DBA2J_G0035433
protein coding gene ChrX:31641151-31694710 (-)
FVB/NJ MGP_FVBNJ_G0035380
protein coding gene ChrX:31414165-31461788 (-)
LP/J MGP_LPJ_G0035515
protein coding gene ChrX:32097727-32142391 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035424
protein coding gene ChrX:33712877-33741950 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036138
protein coding gene ChrX:31722428-31773810 (-)
PWK/PhJ MGP_PWKPhJ_G0034305
protein coding gene ChrX:19688008-19742225 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034146
protein coding gene ChrX:20707091-20760704 (-)
WSB/EiJ MGP_WSBEiJ_G0034739
protein coding gene ChrX:31517568-31570366 (-)



Homology
more
  • Human Ortholog
    CXorf56, chromosome X open reading frame 56
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CXorf56, chromosome X open reading frame 56
    Orthology source: HGNC, HomoloGene
  • Synonyms
    MRX107
  • Links
    NCBI Gene ID: 63932
    neXtProt AC: NX_Q9H5V9
    UniProt: Q9H5V9

  • Chr Location
    Xq24; chrX:119538149-119565434 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotypes from 2 alleles in 1 genetic background
    17 images
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Male chimeras hemizygous for a gene trapped allele exhibit abnormal midbrain-hindbrain boundary morphology and decreased forebrain size. A subset of male chimeras hemizygous for a different gene trapped allele exhibit embryonic growth retardation.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 77644 NCBI Gene Model | MGI Sequence Detail 36753 C57BL/6J ±  kb
transcript NM_029951 RefSeq | MGI Sequence Detail 3340 C57BL/6  
polypeptide Q8VDP2 UniProt | EBI | MGI Sequence Detail 222 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
  • InterPro Domains
    IPR029704 UPF0428 family
Molecular
Reagents
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  • All nucleic 74
    cDNA 74

    Microarray probesets 5
References
more
  • Summaries
    All 29
    Gene Ontology 3
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:261840 Verkerk AJMH, et al., CXorf56, a dendritic neuronal protein, identified as a new candidate gene for X-linked intellectual disability. Eur J Hum Genet. 2018 Apr;26(4):552-560

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/04/2018
MGI 6.13
The Jackson Laboratory