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Efcab6 Gene Detail
Summary
  • Symbol
    Efcab6
  • Name
    EF-hand calcium binding domain 6
  • Synonyms
    4931407K02Rik, 4932408N08Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924877
    NCBI Gene: 77627
  • Gene Overview
    MyGene.info: EFCAB6
Location & Maps
more
  • Sequence Map
    Chr15:83866712-84065379 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      198668 bp   ±  kb flank

  • Genome Browsers
Homology
more
  • Human Ortholog
    EFCAB6, EF-hand calcium binding domain 6
  • Vertebrate Orthologs
    9
  • Human Ortholog
    EFCAB6, EF-hand calcium binding domain 6
    Orthology source: HGNC, HomoloGene
  • Synonyms
    dJ185D5.1, DJBP, HSCBCIP1
  • Links
    NCBI Gene ID: 64800
    neXtProt AC: NX_Q5THR3

  • Chr Location
    22q13.2; chr22:43528561-43812337 (-)  GRCh38.p2

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    21 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    1
  • Radiation induced
    2
  • Targeted
    4
  • Genomic Mutations
    3 involving Efcab6
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000026031 VEGA Gene Model | MGI Sequence Detail 198668 C57BL/6J ±  kb
transcript OTTMUST00000064245 VEGA | MGI Sequence Detail 5012 Not Applicable  
polypeptide OTTMUSP00000031879 VEGA | MGI Sequence Detail 1516 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    1040 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000006912 EF-hand calcium-binding domain-containing protein 6
  • InterPro Domains
    IPR015070 DJBP, EF-hand domain
    IPR018247 EF-Hand 1, calcium-binding site
    IPR002048 EF-hand domain
    IPR011992 EF-hand domain pair
Molecular
Reagents
less
  • All nucleic 23
    cDNA 23

    Microarray probesets 5
Other
Accession IDs
less
MGI:1921618
References
more
  • Summaries
    All 25
    Diseases 1
    Gene Ontology 2
    Phenotypes 21
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/26/2016
MGI 6.03
The Jackson Laboratory