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Efcab6
Gene Detail
 Symbol
Name
ID
Efcab6
EF-hand calcium binding domain 6
MGI:1924877
Synonyms 4931407K02Rik, 4932408N08Rik
Feature Type protein coding gene
Genetic Map
Chromosome 15
39.48 cM, cytoband E3
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr15:83866712-84065379 bp, - strand
From VEGA annotation of GRCm38

  198668 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11259  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

Gene Tree: Efcab6

Human
homologs
Human Homolog EFCAB6, EF-hand calcium binding domain 6
NCBI Gene ID 64800
neXtProt AC  NX_Q5THR3
Human Synonyms  dJ185D5.1, DJBP, HSCBCIP1
Human Chr (Location)  22q13.2; chr22:43528744-43812337 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Radiation induced(1) Targeted(3)
Genomic Mutations involving Efcab6 (1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Efcab6 interacts with 78 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process regulation of transcription, DNA-templated, transcription, DNA-templated
Component nucleus
Function calcium ion binding, metal ion binding
External Resources: FuncBase
Expression
cDNA source data(23)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(23) cDNA(23)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000026031 (Evidence)
Ensembl Gene ModelENSMUSG00000022441 (Evidence)
Entrez Gene77627 (Evidence)
UniGene196288
DFCITC1582613, TC1716598
DoTSDT.101229447, DT.101367240, DT.40164103, DT.99854496
NIA Mouse Gene IndexU036481
Consensus CDS ProjectCCDS27707.2
International Mouse Knockout Project StatusEfcab6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000026031 VEGA Gene Model | MGI Sequence Detail 198668 C57BL/6J ±  kb
transcript OTTMUST00000064245 VEGA | MGI Sequence Detail 5012 Not Applicable 
polypeptide OTTMUSP00000031879 VEGA | MGI Sequence Detail 1516 Not Applicable 

For the selected sequences
All sequences(61) RefSeq(20) UniProt(2)
Polymorphisms SNPs within 2kb(1032 from dbSNP Build 137)    SNPs within 2kb including multiple locations(1042)
Protein-related
information
ResourceIDDescription
InterPro IPR018247 EF-Hand 1, calcium-binding site
InterPro IPR015070 EF-hand calcium-binding domain-containing protein 6
InterPro IPR002048 EF-hand domain
InterPro IPR011992 EF-hand-like domain
Protein Ontology PR:000006912 EF-hand calcium-binding domain-containing protein 6
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
All references(28)
Other
accession IDs
MGI:1921618

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/16/2014
MGI 5.19
The Jackson Laboratory