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Efcab6 Gene Detail
Summary
  • Symbol
    Efcab6
  • Name
    EF-hand calcium binding domain 6
  • Synonyms
    4931407K02Rik, 4932408N08Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924877
    NCBI Gene: 77627
  • Gene Overview
    MyGene.info: EFCAB6
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:83866712-84065379 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 39.48 cM, cytoband E3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1040 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924877
protein coding gene Chr15:83866712-84075025 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022171
protein coding gene Chr15:84606467-84813175 (-)
A/J MGP_AJ_G0022130
protein coding gene Chr15:81497276-81697254 (-)
AKR/J MGP_AKRJ_G0022105
protein coding gene Chr15:83871713-84075474 (-)
BALB/cJ MGP_BALBcJ_G0022136
protein coding gene Chr15:81640164-81839152 (-)
C3H/HeJ MGP_C3HHeJ_G0021906
protein coding gene Chr15:83825549-84029538 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022581
protein coding gene Chr15:87849205-88062489 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020106
protein coding gene Chr15:77867425-78065409 (-)
CAST/EiJ MGP_CASTEiJ_G0021428
protein coding gene Chr15:84606332-84818648 (-)
CBA/J MGP_CBAJ_G0021873
protein coding gene Chr15:90656733-90878581 (-)
DBA/2J MGP_DBA2J_G0022000
protein coding gene Chr15:80981825-81181628 (-)
FVB/NJ MGP_FVBNJ_G0021979
protein coding gene Chr15:80033398-80235178 (-)
LP/J MGP_LPJ_G0022071
protein coding gene Chr15:84767964-84979985 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021999
protein coding gene Chr15:95518249-95726004 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022596
protein coding gene Chr15:83873446-84081680 (-)
PWK/PhJ MGP_PWKPhJ_G0021169
protein coding gene Chr15:80975399-81173789 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021003
protein coding gene Chr15:83603743-83792912 (-)
WSB/EiJ MGP_WSBEiJ_G0021477
protein coding gene Chr15:84378325-84584510 (-)



Homology
more
  • Human Ortholog
    EFCAB6, EF-hand calcium binding domain 6
  • Vertebrate Orthologs
    9
  • Human Ortholog
    EFCAB6, EF-hand calcium binding domain 6
    Orthology source: HomoloGene, HGNC
  • Synonyms
    dJ185D5.1, DJBP, HSCBCIP1
  • Links
    NCBI Gene ID: 64800
    neXtProt AC: NX_Q5THR3
    UniProt: Q5THR3

  • Chr Location
    22q13.2-q13.31; chr22:43528549-43812403 (-)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    22 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000022441 Ensembl Gene Model | MGI Sequence Detail 198668 C57BL/6J ±  kb
transcript ENSMUST00000156187 Ensembl | MGI Sequence Detail 5012 Not Applicable  
polypeptide ENSMUSP00000114909 Ensembl | MGI Sequence Detail 1516 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 24
    cDNA 24

    Microarray probesets 5
Other
Accession IDs
less
MGI:1921618
References
more
  • Summaries
    All 47
    Diseases 1
    Gene Ontology 5
    Phenotypes 22
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory