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H2afv Gene Detail
Summary
  • Symbol
    H2afv
  • Name
    H2A histone family, member V
  • Synonyms
    C530002L11Rik, H2A.Z2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924855
    NCBI Gene: 77605
  • Gene Overview
    MyGene.info: H2AFV
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:6427229-6444443 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 4.01 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    99 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924855
protein coding gene Chr11:6427226-6444449 (-)
129S1/SvImJ MGP_129S1SvImJ_G0018023
protein coding gene Chr11:3547725-3568674 (-)
A/J MGP_AJ_G0017996
protein coding gene Chr11:3393553-3413191 (-)
AKR/J MGP_AKRJ_G0017960
protein coding gene Chr11:3559823-3580434 (-)
BALB/cJ MGP_BALBcJ_G0017964
protein coding gene Chr11:3402506-3420276 (-)
C3H/HeJ MGP_C3HHeJ_G0017777
protein coding gene Chr11:3434338-3452811 (-)
C57BL/6NJ MGP_C57BL6NJ_G0018416
protein coding gene Chr11:3646628-3665295 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016074
protein coding gene Chr11:3282877-3301214 (-)
CAST/EiJ MGP_CASTEiJ_G0017339
protein coding gene Chr11:3420766-3445289 (-)
CBA/J MGP_CBAJ_G0017752
protein coding gene Chr11:4059646-4078329 (-)
DBA/2J MGP_DBA2J_G0017862
protein coding gene Chr11:3306909-3324108 (-)
FVB/NJ MGP_FVBNJ_G0017854
protein coding gene Chr11:3330023-3347936 (-)
LP/J MGP_LPJ_G0017933
protein coding gene Chr11:3617538-3634558 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0017880
protein coding gene Chr11:3600846-3618963 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0018456
protein coding gene Chr11:3583760-3601288 (-)
PWK/PhJ MGP_PWKPhJ_G0017119
protein coding gene Chr11:3333051-3356858 (-)
SPRET/EiJ MGP_SPRETEiJ_G0016916
protein coding gene Chr11:3520965-3548450 (-)
WSB/EiJ MGP_WSBEiJ_G0017393
protein coding gene Chr11:3401643-3421752 (-)



Homology
more
  • Human Ortholog
    H2AFV, H2A histone family member V
  • Vertebrate Orthologs
    8
  • Human Ortholog
    H2AFV, H2A histone family member V
    Orthology source: HomoloGene, HGNC
  • Synonyms
    H2AV, H2A.Z-2
  • Links
    NCBI Gene ID: 94239
    neXtProt AC: NX_Q71UI9
    UniProt: Q71UI9

  • Chr Location
    7p13; chr7:44826889-44848126 (-)  GRCh38.p7

Human Diseases
less
  • Mutations/Alleles
    1 with disease annotations
  • References
    15 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    584 phenotypes from multigenic genotypes
    19 images
    585 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000041126 Ensembl Gene Model | MGI Sequence Detail 17215 C57BL/6J ±  kb
transcript ENSMUST00000109737 Ensembl | MGI Sequence Detail 1633 Not Applicable  
polypeptide ENSMUSP00000105359 Ensembl | MGI Sequence Detail 128 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 135
    Genomic 1
    cDNA 130
    Primer pair 4

    Microarray probesets 3
Other
Accession IDs
less
MGI:2447280
References
more
  • Summaries
    All 612
    Developmental Gene Expression 4
    Diseases 15
    Gene Ontology 5
    Phenotypes 585
  • Earliest
    J:69326 Danielian PS, et al., Modification of gene activity in mouse embryos in utero by a tamoxifen-inducible form of Cre recombinase. Curr Biol. 1998 Dec 3;8(24):1323-6
  • Latest
    J:265719 Goffena J, et al., Elongator and codon bias regulate protein levels in mammalian peripheral neurons. Nat Commun. 2018 Mar 1;9(1):889

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory