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Ddx10
Gene Detail
Symbol

Name
ID
Ddx10
DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
MGI:1924841
Synonyms
4632415A01Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 9
29.12 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr9:53098454-53248112 bp, - strand
From Ensembl annotation of GRCm38

  149659 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:20922  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: DDX10
Gene Tree: Ddx10

Human
homologs
DDX10, DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 1662
neXtProt AC: NX_Q13206

Human Synonyms: HRH-J8

Human Chr (Location): 11q22-q23; chr11:108665025-108940930 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(19) : Gene trapped(18) Spontaneous(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Ddx10 interacts with 151 markers (Mir1b, Mir7-1, Mir7-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Process RNA secondary structure unwinding
Component cellular_component
Function ATP binding, ATP-dependent RNA helicase activity, ...
External Resources: FuncBase
Expression
cDNA source data(64)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase ddx10    NEW 
Molecular
reagents
All nucleic(64) cDNA(64)
Microarray probesets(6)
Other database
links
Ensembl Gene Model ENSMUSG00000053289 (Evidence)
Entrez Gene 77591 (Evidence)
UniGene 133560
DFCI TC1576468
DoTS DT.103559697, DT.488685
NIA Mouse Gene Index U030868
EC 3.6.4.13
Consensus CDS Project CCDS52796.1
International Mouse Phenotyping Consortium Status Ddx10
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000053289 Ensembl Gene Model | MGI Sequence Detail 149659 C57BL/6J ±  kb
transcript ENSMUST00000065630 Ensembl | MGI Sequence Detail 3368 Not Applicable 
polypeptide ENSMUSP00000065198 Ensembl | MGI Sequence Detail 875 Not Applicable 

For the selected sequences
All sequences(33) RefSeq(4) UniProt(7)
Polymorphisms
SNPs within 2kb(246 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site
InterPro IPR011545 DEAD/DEAH box helicase domain
InterPro IPR025313 Domain of unknown function DUF4217
InterPro IPR001650 Helicase, C-terminal
InterPro IPR014001 Helicase superfamily 1/2, ATP-binding domain
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
InterPro IPR014014 RNA helicase, DEAD-box type, Q motif
Protein Ontology PR:000029381 ATP-dependent RNA helicase DDX10
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:223062 Palmer K, et al., Discovery and characterization of spontaneous mouse models of craniofacial dysmorphology. Dev Biol. 2015 Jul 30;
All references(34)
Other
accession IDs
MGI:2143106

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory