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Bcl9 Gene Detail
Summary
  • Symbol
    Bcl9
  • Name
    B cell CLL/lymphoma 9
  • Synonyms
    2610202E01Rik, 8030475K17Rik, A330041G23Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924828
    NCBI Gene: 77578
  • Gene Overview
    MyGene.info: BCL9
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:97203662-97297917 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 42.04 cM, cytoband F2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    355 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924828
protein coding gene Chr3:97203658-97298081 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027639
protein coding gene Chr3:98123464-98218106 (-)
A/J MGP_AJ_G0027601
protein coding gene Chr3:94994636-95086789 (-)
AKR/J MGP_AKRJ_G0027568
protein coding gene Chr3:97259592-97351318 (-)
BALB/cJ MGP_BALBcJ_G0027611
protein coding gene Chr3:94803772-94894692 (-)
C3H/HeJ MGP_C3HHeJ_G0027343
protein coding gene Chr3:97542226-97638830 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028057
protein coding gene Chr3:101744394-101841184 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025398
protein coding gene Chr3:91225424-91312899 (-)
CAST/EiJ MGP_CASTEiJ_G0026798
protein coding gene Chr3:96801594-96895586 (-)
CBA/J MGP_CBAJ_G0027318
protein coding gene Chr3:105398439-105489791 (-)
DBA/2J MGP_DBA2J_G0027461
protein coding gene Chr3:94298997-94388940 (-)
FVB/NJ MGP_FVBNJ_G0027430
protein coding gene Chr3:92315088-92402177 (-)
LP/J MGP_LPJ_G0027566
protein coding gene Chr3:99397548-99490664 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027456
protein coding gene Chr3:111485942-111579950 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028111
protein coding gene Chr3:96855073-96949794 (-)
PWK/PhJ MGP_PWKPhJ_G0026523
protein coding gene Chr3:94149573-94239677 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026345
protein coding gene Chr3:95127445-95217264 (-)
WSB/EiJ MGP_WSBEiJ_G0026876
protein coding gene Chr3:97304139-97395861 (-)



Homology
more
  • Human Ortholog
    BCL9, B cell CLL/lymphoma 9
  • Vertebrate Orthologs
    10
  • Human Ortholog
    BCL9, B cell CLL/lymphoma 9
    Orthology source: HomoloGene, HGNC
  • Synonyms
    LGS
  • Links
    NCBI Gene ID: 607
    neXtProt AC: NX_O00512
    UniProt: O00512

  • Chr Location
    1q21.2; chr1:147541394-147626219 (+)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from multigenic genotypes
    11 phenotype references
Mice carrying homozygous floxed Bcl9 and Bcl9l alleles, inactivated in muscle cells, exhibit impaired muscle regeneration due to increased apoptosis.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038256 Ensembl Gene Model | MGI Sequence Detail 94256 C57BL/6J ±  kb
transcript ENSMUST00000046521 Ensembl | MGI Sequence Detail 6102 Not Applicable  
polypeptide ENSMUSP00000046152 Ensembl | MGI Sequence Detail 1425 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 5
Other
Accession IDs
less
MGI:1919744, MGI:2441728, MGI:2684976
References
more
  • Summaries
    All 44
    Developmental Gene Expression 6
    Diseases 1
    Gene Ontology 10
    Phenotypes 11
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:245963 Cho IT, et al., Aristaless Related Homeobox (ARX) Interacts with beta-Catenin, BCL9, and P300 to Regulate Canonical Wnt Signaling. PLoS One. 2017;12(1):e0170282

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory