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Bcl9
Gene Detail
Symbol

Name
ID
Bcl9
B cell CLL/lymphoma 9
MGI:1924828
Synonyms
2610202E01Rik, 8030475K17Rik, A330041G23Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 3
42.04 cM, cytoband F2
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr3:97203662-97228846 bp, - strand
From VEGA annotation of GRCm38

  25185 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:3191  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: beta-catenin binding protein, BCL9/BCL9-2 types
Gene Tree: Bcl9

Human
homologs
Human Homolog BCL9, B-cell CLL/lymphoma 9
NCBI Gene ID 607
neXtProt AC  NX_O00512
Human Synonyms  LGS
Human Chr (Location)  1q21; chr1:147541401-147626219 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(1) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
 
Mice carrying homozygous floxed Bcl9 and Bcl9l alleles, inactivated in muscle cells, exhibit impaired muscle regeneration due to increased apoptosis.
 
Interactions
Bcl9 interacts with 306 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (14 annotations)
Process canonical Wnt signaling pathway, myotube differentiation involved in skeletal muscle regeneration, ...
Component cis-Golgi network, cytoplasm, ...
Function beta-catenin binding
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (47)    Tissues (35)    Images (13)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 47
cDNA source data(9)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(10) cDNA(10)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000022435 (Evidence)
Ensembl Gene ModelENSMUSG00000038256 (Evidence)
Entrez Gene77578 (Evidence)
DFCITC1602914, TC1586623, TC1582494, TC1660944
DoTSDT.40185532, DT.60106528, DT.481729
NIA Mouse Gene IndexU024400
Consensus CDS ProjectCCDS17654.1
International Mouse Knockout Project StatusBcl9
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022435 VEGA Gene Model | MGI Sequence Detail 25185 C57BL/6J ±  kb
transcript OTTMUST00000053628 VEGA | MGI Sequence Detail 6102 Not Applicable 
polypeptide OTTMUSP00000025509 VEGA | MGI Sequence Detail 1425 Not Applicable 

For the selected sequences
All sequences(54) RefSeq(12) UniProt(1)
Polymorphisms
SNPs within 2kb(73 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR015668 B Cell Lymphoma 9
InterPro IPR024670 B-cell lymphoma 9, beta-catenin binding domain
Protein Ontology PR:000004704 B-cell CLL/lymphoma 9 protein
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:206668 Liegel RP, et al., Loss-of-function mutations in TBC1D20 cause cataracts and male infertility in blind sterile mice and Warburg micro syndrome in humans. Am J Hum Genet. 2013 Dec 5;93(6):1001-14
All references(37)
Other
accession IDs
MGI:1919744, MGI:2441728, MGI:2684976

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory