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Limch1 Gene Detail
Summary
  • Symbol
    Limch1
  • Name
    LIM and calponin homology domains 1
  • Synonyms
    3732412D22Rik, mKIAA1102
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924819
    NCBI Gene: 77569
  • Gene Overview
    MyGene.info: LIMCH1
  • Alliance
  • Transcription Start Sites
    16 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:66745840-67057159 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 35.95 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1678 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924819
protein coding gene Chr5:66745827-67057159 (.)
129S1/SvImJ MGP_129S1SvImJ_G0029591
protein coding gene Chr5:66492877-66823348 (+)
A/J MGP_AJ_G0029559
protein coding gene Chr5:63997192-64314226 (+)
AKR/J MGP_AKRJ_G0029507
protein coding gene Chr5:66050159-66362990 (+)
BALB/cJ MGP_BALBcJ_G0029568
protein coding gene Chr5:64691081-65001289 (+)
C3H/HeJ MGP_C3HHeJ_G0029291
protein coding gene Chr5:66374665-66693356 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030022
protein coding gene Chr5:69243552-69582379 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027262
protein coding gene Chr5:60065999-60377168 (+)
CAST/EiJ MGP_CASTEiJ_G0028699
protein coding gene Chr5:65550136-65871213 (+)
CBA/J MGP_CBAJ_G0029260
protein coding gene Chr5:71469715-71815929 (+)
DBA/2J MGP_DBA2J_G0029406
protein coding gene Chr5:64021730-64336895 (+)
FVB/NJ MGP_FVBNJ_G0029366
protein coding gene Chr5:63205377-63513683 (+)
LP/J MGP_LPJ_G0029491
protein coding gene Chr5:66990997-67321900 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029394
protein coding gene Chr5:74283798-74601353 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030055
protein coding gene Chr5:65724809-66041917 (+)
PWK/PhJ MGP_PWKPhJ_G0028423
protein coding gene Chr5:63042572-63364546 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028257
protein coding gene Chr5:65068292-65393253 (+)
WSB/EiJ MGP_WSBEiJ_G0028779
protein coding gene Chr5:65948428-66279177 (+)



Homology
more
  • Human Ortholog
    LIMCH1, LIM and calponin homology domains 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    LIMCH1, LIM and calponin homology domains 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    LIMCH1A, LMO7B
  • Links
    NCBI Gene ID: 22998
    neXtProt AC: NX_Q9UPQ0
    UniProt: Q9UPQ0

  • Chr Location
    4p13; chr4:41359607-41700044 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 18953
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: LIMCH1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    22 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 77569 NCBI Gene Model | MGI Sequence Detail 311320 C57BL/6J ±  kb
transcript NM_001001980 RefSeq | MGI Sequence Detail 6142 C57BL/6  
polypeptide Q3UH68 UniProt | EBI | MGI Sequence Detail 1057 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 81
    cDNA 79
    Primer pair 1
    Other 1

    Microarray probesets 5
References
more
  • Summaries
    All 52
    Developmental Gene Expression 7
    Gene Ontology 3
    Phenotypes 22
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:245876 Rohacek AM, et al., ESRP1 Mutations Cause Hearing Loss due to Defects in Alternative Splicing that Disrupt Cochlear Development. Dev Cell. 2017 Nov 06;43(3):318-331.e5

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory