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R3hdm4 Gene Detail
Summary
  • Symbol
    R3hdm4
  • Name
    R3H domain containing 4
  • Synonyms
    C030046I01Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924814
    NCBI Gene: 109284
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:79910052-79917047 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 39.72 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    21 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924814
protein coding gene Chr10:79910052-79921208 (-)
129S1/SvImJ MGP_129S1SvImJ_G0017469
protein coding gene Chr10:80471029-80482194 (-)
A/J MGP_AJ_G0017447
protein coding gene Chr10:77665139-77672090 (-)
AKR/J MGP_AKRJ_G0017408
protein coding gene Chr10:79783624-79790574 (-)
BALB/cJ MGP_BALBcJ_G0017409
protein coding gene Chr10:77892041-77898993 (-)
C3H/HeJ MGP_C3HHeJ_G0017232
protein coding gene Chr10:79886383-79894363 (-)
C57BL/6NJ MGP_C57BL6NJ_G0017863
protein coding gene Chr10:83252982-83259908 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0015551
protein coding gene Chr10:73891197-73898446 (-)
CAST/EiJ MGP_CASTEiJ_G0016799
protein coding gene Chr10:80075334-80085582 (-)
CBA/J MGP_CBAJ_G0017204
protein coding gene Chr10:86477240-86484141 (-)
DBA/2J MGP_DBA2J_G0017310
protein coding gene Chr10:76880475-76887425 (-)
FVB/NJ MGP_FVBNJ_G0017304
protein coding gene Chr10:76057304-76065759 (-)
LP/J MGP_LPJ_G0017381
protein coding gene Chr10:80950517-80959253 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0017330
protein coding gene Chr10:88448789-88455673 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017904
protein coding gene Chr10:79769038-79775991 (-)
PWK/PhJ MGP_PWKPhJ_G0016580
protein coding gene Chr10:76746091-76754683 (-)
SPRET/EiJ MGP_SPRETEiJ_G0016369
protein coding gene Chr10:78741816-78748710 (-)
WSB/EiJ MGP_WSBEiJ_G0016859
protein coding gene Chr10:79792186-79800241 (-)



Homology
more
  • Human Ortholog
    R3HDM4, R3H domain containing 4
  • Vertebrate Orthologs
    10
  • Human Ortholog
    R3HDM4, R3H domain containing 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C19orf22
  • Links
    NCBI Gene ID: 91300
    neXtProt AC: NX_Q96D70
    UniProt: Q96D70

  • Chr Location
    19p13.3; chr19:896503-913225 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 16343
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: R3HDM4
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    1
  • Gene trapped
    2
  • Targeted
    1
  • Genomic Mutations
    1 involving R3hdm4
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 109284 NCBI Gene Model | MGI Sequence Detail 6996 C57BL/6J ±  kb
transcript NM_177994 RefSeq | MGI Sequence Detail 1821 NOD  
polypeptide Q4VBF2 UniProt | EBI | MGI Sequence Detail 262 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 86
    cDNA 86

    Microarray probesets 3
Other
Accession IDs
less
MGI:2143630
References
more
  • Summaries
    All 32
    Gene Ontology 2
    Phenotypes 10
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory