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Shisa4 Gene Detail
Summary
  • Symbol
    Shisa4
  • Name
    shisa family member 4
  • Synonyms
    9330132O05Rik, Tmem58
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924802
    NCBI Gene: 77552
  • Alliance
  • Transcription Start Sites
    14 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:135371057-135375237 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 58.58 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    59 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924802
protein coding gene Chr1:135371057-135375278 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016523
protein coding gene Chr1:139136062-139140192 (-)
A/J MGP_AJ_G0016506
protein coding gene Chr1:133873395-133877532 (-)
AKR/J MGP_AKRJ_G0016471
protein coding gene Chr1:137852058-137856189 (-)
BALB/cJ MGP_BALBcJ_G0016466
protein coding gene Chr1:134188149-134192329 (-)
C3H/HeJ MGP_C3HHeJ_G0016292
protein coding gene Chr1:137950403-137954537 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016927
protein coding gene Chr1:144161052-144165232 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014638
protein coding gene Chr1:126974153-126978250 (-)
CAST/EiJ MGP_CASTEiJ_G0015872
protein coding gene Chr1:137030070-137034258 (-)
CBA/J MGP_CBAJ_G0016265
protein coding gene Chr1:149145369-149152973 (-)
DBA/2J MGP_DBA2J_G0016371
protein coding gene Chr1:132867269-132871404 (-)
FVB/NJ MGP_FVBNJ_G0016370
protein coding gene Chr1:131506753-131512572 (-)
LP/J MGP_LPJ_G0016442
protein coding gene Chr1:140368900-140374738 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016395
protein coding gene Chr1:154823554-154827754 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016963
protein coding gene Chr1:137610968-137615136 (-)
PWK/PhJ MGP_PWKPhJ_G0015658
protein coding gene Chr1:131895566-131899831 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015445
protein coding gene Chr1:136580685-136584814 (-)
WSB/EiJ MGP_WSBEiJ_G0015935
protein coding gene Chr1:137651078-137657953 (-)



Homology
more
  • Human Ortholog
    SHISA4, shisa family member 4
  • Vertebrate Orthologs
    8
  • Human Ortholog
    SHISA4, shisa family member 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C1orf40, TMEM58
  • Links
    NCBI Gene ID: 149345
    neXtProt AC: NX_Q96DD7
    UniProt: Q96DD7

  • Chr Location
    1q32.1; chr1:201888669-201899346 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    11 phenotype references
Mice homozygous for a knock-out allele are fertile and phenotypically normal.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000041889 Ensembl Gene Model | MGI Sequence Detail 4181 C57BL/6J ±  kb
transcript ENSMUST00000041240 Ensembl | MGI Sequence Detail 1763 Not Applicable  
polypeptide ENSMUSP00000046033 Ensembl | MGI Sequence Detail 197 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    Genomic 1
    cDNA 5

    Microarray probesets 3
References
more
  • Summaries
    All 29
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 11
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory