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Jrkl Gene Detail
Summary
  • Symbol
    Jrkl
  • Name
    Jrk-like
  • Synonyms
    C030035D04Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924782
    NCBI Gene: 77532
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr9:13242790-13245741 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, Syntenic
Strain
Comparison
more
  • SNPs within 2kb
    1 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924782
protein coding gene Chr9:13242607-13245829 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034340
protein coding gene Chr9:10239030-10243308 (-)
A/J MGP_AJ_G0034318
protein coding gene Chr9:10212252-10215203 (-)
AKR/J MGP_AKRJ_G0034246
protein coding gene Chr9:10185714-10188665 (-)
BALB/cJ MGP_BALBcJ_G0034312
protein coding gene Chr9:9967892-9970843 (-)
C3H/HeJ MGP_C3HHeJ_G0034023
protein coding gene Chr9:10474374-10477325 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034834
protein coding gene Chr9:10578642-10581511 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031772
protein coding gene Chr9:9573187-9576172 (-)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0033996
protein coding gene Chr9:11048399-11053178 (-)
DBA/2J MGP_DBA2J_G0034153
protein coding gene Chr9:10085187-10089177 (-)
FVB/NJ MGP_FVBNJ_G0034098
protein coding gene Chr9:9714377-9717328 (-)
LP/J MGP_LPJ_G0034239
protein coding gene Chr9:10285233-10292214 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034142
protein coding gene Chr9:12175674-12177726 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034853
protein coding gene Chr9:10224018-10226969 (-)
PWK/PhJ MGP_PWKPhJ_G0033056
protein coding gene Chr9:10160062-10163021 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032892
protein coding gene Chr9:10295230-10298174 (-)
WSB/EiJ MGP_WSBEiJ_G0033466
protein coding gene Chr9:10047781-10050251 (-)



Homology
more
  • Human Ortholog
    JRKL, JRK like
  • Vertebrate Orthologs
    7
  • Human Ortholog
    JRKL, JRK like
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HHMJG
  • Links
    NCBI Gene ID: 8690
    neXtProt AC: NX_Q9Y4A0
    UniProt: Q9Y4A0

  • Chr Location
    11q21; chr11:96389994-96393563 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 77532 NCBI Gene Model | MGI Sequence Detail 2952 C57BL/6J ±  kb
transcript NM_001033181 RefSeq | MGI Sequence Detail 2952 Not Specified  
polypeptide B2RRL2 UniProt | EBI | MGI Sequence Detail 523 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR004875 DDE superfamily endonuclease domain
    IPR007889 DNA binding HTH domain, Psq-type
    IPR009057 Homeobox-like domain superfamily
    IPR006600 HTH CenpB-type DNA-binding domain
    IPR036388 Winged helix-like DNA-binding domain superfamily
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3
References
more
  • Summaries
    All 15
    Gene Ontology 2
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/30/2020
MGI 6.15
The Jackson Laboratory