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Ssc4d Gene Detail
Summary
  • Symbol
    Ssc4d
  • Name
    scavenger receptor cysteine rich family, 4 domains
  • Synonyms
    C330016E03Rik, Srcrb4d
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924709
    NCBI Gene: 109267
Location & Maps
more
  • Sequence Map
    Chr5:135960211-135974531 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      14321 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 75.60 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    SSC4D, scavenger receptor cysteine rich family member with 4 domains
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SSC4D, scavenger receptor cysteine rich family member with 4 domains
    Orthology source: HGNC, HomoloGene
  • Synonyms
    S4D-SRCRB, SRCRB4D, SRCRB-S4D
  • Links
    NCBI Gene ID: 136853
    neXtProt AC: NX_Q8WTU2

  • Chr Location
    7q11.23; chr7:76389329-76409695 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    27
  • Gene trapped
    25
  • Targeted
    2
  • Incidental Mutations
    APF , CvDC
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023659 VEGA Gene Model | MGI Sequence Detail 14321 C57BL/6J ±  kb
transcript OTTMUST00000057739 VEGA | MGI Sequence Detail 2745 Not Applicable  
polypeptide OTTMUSP00000027885 VEGA | MGI Sequence Detail 586 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    70 from dbSNP Build 142
Protein
Information
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  • UniProt
    7 Sequences
  • Protein Ontology
    PR:000031066 scavenger receptor cysteine-rich domain-containing group B protein
  • InterPro Domains
    IPR001190 SRCR domain
    IPR017448 SRCR-like domain
Molecular
Reagents
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  • All nucleic 10
    cDNA 10

    Microarray probesets 4
References
more
  • Summaries
    All 26
    Gene Ontology 3
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory