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Ssc4d Gene Detail
Summary
  • Symbol
    Ssc4d
  • Name
    scavenger receptor cysteine rich family, 4 domains
  • Synonyms
    C330016E03Rik, Srcrb4d
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924709
    NCBI Gene: 109267
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:135989074-136003389 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 75.60 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    70 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924709
 protein coding gene Chr5:135989065-136003389 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030194
 protein coding gene Chr5:140565739-140581748 (-)
A/J MGP_AJ_G0030162
 protein coding gene Chr5:134521205-134535643 (-)
AKR/J MGP_AKRJ_G0030095
 protein coding gene Chr5:138871343-138885777 (-)
BALB/cJ MGP_BALBcJ_G0030172
 protein coding gene Chr5:135878249-135892631 (-)
C3H/HeJ MGP_C3HHeJ_G0029888
 protein coding gene Chr5:139478565-139494534 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030625
 protein coding gene Chr5:145795877-145810578 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027847
 protein coding gene Chr5:128807265-128818688 (-)
CAST/EiJ MGP_CASTEiJ_G0029298
 protein coding gene Chr5:138876181-138892078 (-)
CBA/J MGP_CBAJ_G0029858
 protein coding gene Chr5:151471370-151492075 (-)
DBA/2J MGP_DBA2J_G0030009
 protein coding gene Chr5:134420585-134435759 (-)
FVB/NJ MGP_FVBNJ_G0029964
 protein coding gene Chr5:133567893-133584799 (-)
LP/J MGP_LPJ_G0030098
 protein coding gene Chr5:140992426-141008577 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029996
 protein coding gene Chr5:154471866-154487263 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030665
 protein coding gene Chr5:138667948-138683265 (-)
PWK/PhJ MGP_PWKPhJ_G0029011
 protein coding gene Chr5:133478317-133493704 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028847
 protein coding gene Chr5:136215951-136234537 (-)
WSB/EiJ MGP_WSBEiJ_G0029371
 protein coding gene Chr5:139403553-139419770 (-)



Homology
more
  • Human Ortholog
    SSC4D, scavenger receptor cysteine rich family member with 4 domains
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SSC4D, scavenger receptor cysteine rich family member with 4 domains
  • Synonyms
    S4D-SRCRB, SRCRB4D, SRCRB-S4D
  • Links
    NCBI Gene ID: 136853
    neXtProt AC: NX_Q8WTU2
    UniProt: Q8WTU2

  • Chr Location
    7q11.23; chr7:76389334-76409697 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    11
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 109267 NCBI Gene Model | MGI Sequence Detail 14316 C57BL/6J ±  kb
transcript NM_001160366 RefSeq | MGI Sequence Detail 2728 C57BL/6  
polypeptide A1L0T3 UniProt | EBI | MGI Sequence Detail 586 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 4
References
more
  • Summaries
    All 28
    Gene Ontology 2
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:177774 Kumar V, et al., Second-generation high-throughput forward genetic screen in mice to isolate subtle behavioral mutants. Proc Natl Acad Sci U S A. 2011 Sep 13;108 Suppl 3:15557-64
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory