Redrum Gene Detail

Summary

• Symbol
  Redrum
• Name
  Redrum, erythroid developmental long intergenic non-protein coding transcript
• Synonyms
  9430076G02Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1924683
  NCBI Gene: 77433
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr18:54555367-54586366 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 29.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  880 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924683	lncRNA gene	Chr18:54539828-54586848 (+)
129S1/SvImJ	ENSMUSG00200034089	lncRNA gene	Chr18:51592190-51623169 (+)
A/J	ENSMUSG00195005420	lncRNA gene	Chr18:51740038-51771027 (+)
AKR/J	ENSMUSG00220016364	lncRNA gene	Chr18:51727363-51758385 (+)
BALB/cJ	ENSMUSG00180012607	lncRNA gene	Chr18:52307999-52339028 (+)
C3H/HeJ	ENSMUSG00175037035	lncRNA gene	Chr18:51922377-51953402 (+)
C57BL/6NJ	ENSMUSG00215039664	lncRNA gene	Chr18:51283386-51314407 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005261	lincRNA gene	Chr18:51267240-51298604 (+)
CAST/EiJ	ENSTCUG00005027573	lncRNA gene	Chr18:51123670-51161354 (+)
CBA/J	ENSMUSG00210032884	lncRNA gene	Chr18:51855161-51886180 (+)
DBA/2J	ENSMUSG00185016038	lncRNA gene	Chr18:51775214-51806235 (+)
FVB/NJ	ENSMUSG00205018193	lncRNA gene	Chr18:51216980-51248001 (+)
JF1/MsJ	ENSUMUG00000035412	lncRNA gene	Chr18:51686140-51717815 (+)
LP/J	ENSMUSG00230011703	lncRNA gene	Chr18:53771452-53802434 (+)
NOD/ShiLtJ	ENSMUSG00190032778	lncRNA gene	Chr18:51485114-51516135 (+)
NZO/HlLtJ	ENSMUSG00225035460	lncRNA gene	Chr18:53673461-53704432 (+)
PWK/PhJ	ENSLUMG00010008663	lncRNA gene	Chr18:51825885-51856929 (+)
SPRET/EiJ	ENSMSPG00010018990	lncRNA gene	Chr18:52174247-52205925 (+)
WSB/EiJ	ENSIUOG00005009750	lncRNA gene	Chr18:51407277-51438268 (+)

Homology

• Gene Tree
  Redrum
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 1 allele in 1 genetic background
  2 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Redrum
• Find Mice (IMSR)
  0 strains or lines available

Mice exhibit normal normal erythropoiesis.

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  617
• Tissues
  12
• cDNA Data
  3
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  1

• Ensembl
  ENSMUSG00000096982 (Evidence)
• NCBI Gene
  77433

Representative Sequences			Length	Strain/Species
genomic	77433	NCBI Gene Model | MGI Sequence Detail	31000	C57BL/6J
transcript	NR_040338	RefSeq | MGI Sequence Detail	2228	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 4

  Primer pair 2

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67

TSS for Redrum:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr151109	Chr18:54555358-54555412 (+)	18 bp
Tssr151110	Chr18:54555442-54555453 (+)	81 bp
Tssr151111	Chr18:54560090-54560094 (+)	4,725 bp