9530003O04Rik Gene Detail

Summary

• Symbol
  9530003O04Rik
• Name
  RIKEN cDNA 9530003O04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924641
  NCBI Gene: 77391
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:77451419-77452326 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  24 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924641	lncRNA gene	Chr16:77451419-77452326 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0000928	unclassified gene	Chr16:77786468-77787375 (+)
A/J	MGP_AJ_G0000904	unclassified gene	Chr16:74353626-74354533 (+)
AKR/J	MGP_AKRJ_G0000892	unclassified gene	Chr16:76587898-76588805 (+)
BALB/cJ	MGP_BALBcJ_G0000897	unclassified gene	Chr16:74749627-74750534 (+)
C3H/HeJ	MGP_C3HHeJ_G0000880	unclassified gene	Chr16:77044127-77045034 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001012	unclassified gene	Chr16:80278158-80279065 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000745	unclassified gene	Chr16:72818626-72819534 (+)
CAST/EiJ	MGP_CASTEiJ_G0000872	unclassified gene	Chr16:77455552-77456459 (+)
CBA/J	MGP_CBAJ_G0000872	unclassified gene	Chr16:83709935-83710842 (+)
DBA/2J	MGP_DBA2J_G0000876	unclassified gene	Chr16:74200879-74201786 (+)
FVB/NJ	MGP_FVBNJ_G0000888	unclassified gene	Chr16:73556147-73557054 (+)
LP/J	MGP_LPJ_G0000931	unclassified gene	Chr16:77525065-77525972 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000879	unclassified gene	Chr16:86917806-86918760 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001006	unclassified gene	Chr16:76923665-76924572 (+)
PWK/PhJ	MGP_PWKPhJ_G0000826	unclassified gene	Chr16:74398505-74399412 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0000799	unclassified gene	Chr16:76544947-76545854 (+)
WSB/EiJ	MGP_WSBEiJ_G0000880	unclassified gene	Chr16:77142999-77143906 (+)

Homology

• Gene Tree
  9530003O04Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  4
• Targeted
  3
• Genomic Mutations
  4 involving 9530003O04Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000102267 (Evidence)
• NCBI Gene
  77391

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102267	Ensembl Gene Model | MGI Sequence Detail	908	C57BL/6J
transcript	AK020539	GenBank | ENA | DDBJ | MGI Sequence Detail	906	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 18

  Diseases 1

  Phenotypes 10
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:335294 Redhead Y, et al., Craniofacial dysmorphology in Down syndrome is caused by increased dosage of Dyrk1a and at least three other genes. Development. 2023 Apr 15;150(8):dev201077

TSS for 9530003O04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139111	Chr16:77450596-77450602 (+)	-820 bp