About   Help   FAQ
Tspan9
Gene Detail
Symbol

Name
ID
Tspan9
tetraspanin 9
MGI:1924558
Synonyms
6720474K14Rik, 9430079M16Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 6
62.73 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr6:127961396-128143594 bp, - strand
From VEGA annotation of GRCm38

  182199 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4860  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 dog; 1 chicken; 1 western clawed frog; 2 zebrafish

HCOP human homology predictions: TSPAN9
Protein SuperFamily: tetraspanin
Gene Tree: Tspan9

Human
homologs
TSPAN9, tetraspanin 9
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 10867
neXtProt AC: NX_O75954

Human Synonyms: NET5, NET-5, PP1057

Human Chr (Location): 12p13.33-p13.32; chr12:3077355-3286564 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(196) : Gene trapped(194) Targeted(2)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Tspan9 interacts with 281 markers (Mir1a-1, Mir1a-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process biological_process
Component focal adhesion, integral component of membrane, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (182)    Tissues (22)    Images (24)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 182
cDNA source data(137)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase tspan9    NEW 
Molecular
reagents
All nucleic(137) cDNA(137)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000022481 (Evidence)
Ensembl Gene Model ENSMUSG00000030352 (Evidence)
Entrez Gene 109246 (Evidence)
UniGene 21814
DFCI TC1616883, TC1599171, TC1580097
DoTS DT.101188873, DT.110485706, DT.101216295, DT.533599, DT.94387992, DT.91369128
NIA Mouse Gene Index U041048
Consensus CDS Project CCDS20568.1
International Mouse Phenotyping Consortium Status Tspan9
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022481 VEGA Gene Model | MGI Sequence Detail 182199 C57BL/6J ±  kb
transcript OTTMUST00000053791 VEGA | MGI Sequence Detail 3819 Not Applicable 
polypeptide OTTMUSP00000025595 VEGA | MGI Sequence Detail 239 Not Applicable 

For the selected sequences
All sequences(83) RefSeq(12) UniProt(5)
Polymorphisms
SNPs within 2kb(982 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR000301 Tetraspanin
InterPro IPR018503 Tetraspanin, conserved site
InterPro IPR008952 Tetraspanin, EC2 domain
InterPro IPR018499 Tetraspanin/Peripherin
Protein Ontology PR:000016755 tetraspanin-9
References
(Earliest) J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(39)
Other
accession IDs
MGI:1915405, MGI:2141557

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
07/21/2015
MGI 5.22
The Jackson Laboratory