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Lrrc39 Gene Detail
Summary
  • Symbol
    Lrrc39
  • Name
    leucine rich repeat containing 39
  • Synonyms
    2010005E21Rik, 9430028I06Rik, Myomasp
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924557
    NCBI Gene: 109245
  • Gene Overview
    MyGene.info: LRRC39
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:116562973-116583134 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 50.39 cM, cytoband G2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    182 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924557
protein coding gene Chr3:116562952-116583134 (.)
129S1/SvImJ MGP_129S1SvImJ_G0027812
protein coding gene Chr3:118466323-118486480 (+)
A/J MGP_AJ_G0027770
protein coding gene Chr3:114589822-114610773 (+)
AKR/J MGP_AKRJ_G0027736
protein coding gene Chr3:117497334-117517482 (+)
BALB/cJ MGP_BALBcJ_G0027782
protein coding gene Chr3:114433062-114453356 (+)
C3H/HeJ MGP_C3HHeJ_G0027513
protein coding gene Chr3:117848288-117876867 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028228
protein coding gene Chr3:122814221-122835984 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025567
protein coding gene Chr3:110281194-110301789 (+)
CAST/EiJ MGP_CASTEiJ_G0026969
protein coding gene Chr3:117140123-117161797 (+)
CBA/J MGP_CBAJ_G0027488
protein coding gene Chr3:127010319-127030445 (+)
DBA/2J MGP_DBA2J_G0027629
protein coding gene Chr3:113820560-113840710 (+)
FVB/NJ MGP_FVBNJ_G0027597
protein coding gene Chr3:111463938-111484788 (+)
LP/J MGP_LPJ_G0027739
protein coding gene Chr3:120009662-120029803 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027627
protein coding gene Chr3:134392774-134414329 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028284
protein coding gene Chr3:117021691-117043813 (+)
PWK/PhJ MGP_PWKPhJ_G0026695
protein coding gene Chr3:113472312-113492747 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026517
protein coding gene Chr3:115042567-115063315 (+)
WSB/EiJ MGP_WSBEiJ_G0027049
protein coding gene Chr3:117710623-117734141 (+)



Homology
more
  • Human Ortholog
    LRRC39, leucine rich repeat containing 39
  • Vertebrate Orthologs
    10
  • Human Ortholog
    LRRC39, leucine rich repeat containing 39
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 127495
    neXtProt AC: NX_Q96DD0
    UniProt: Q96DD0

  • Chr Location
    1p21.2; chr1:100148448-100178273 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 13668
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: LRRC39
  • Gene Tree
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000027961 Ensembl Gene Model | MGI Sequence Detail 20162 C57BL/6J ±  kb
transcript ENSMUST00000029573 Ensembl | MGI Sequence Detail 3087 Not Applicable  
polypeptide ENSMUSP00000029573 Ensembl | MGI Sequence Detail 337 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 14
    cDNA 14

    Microarray probesets 5
Other
Accession IDs
less
MGI:1917361
References
more
  • Summaries
    All 26
    Diseases 1
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory