9430038I01Rik Gene Detail

Summary

• Symbol
  9430038I01Rik
• Name
  RIKEN cDNA 9430038I01 gene

• Feature Type
  protein coding gene
• IDs
  MGI:1924502
  NCBI Gene: 77252
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr7:136977303-137012491 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 82.32 cM, cytoband F5
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924502	protein coding gene	Chr7:136977298-137013972 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0033139	protein coding gene	Chr7:142309530-142347120 (-)
A/J	MGP_AJ_G0033121	protein coding gene	Chr7:138329300-138364909 (-)
AKR/J	MGP_AKRJ_G0033053	protein coding gene	Chr7:142045585-142084906 (-)
BALB/cJ	MGP_BALBcJ_G0033122	protein coding gene	Chr7:138073203-138112275 (-)
C3H/HeJ	MGP_C3HHeJ_G0032836	protein coding gene	Chr7:141886587-141926853 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0033633	protein coding gene	Chr7:147633836-147671651 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0030606	protein coding gene	Chr7:139516891-139551188 (-)
CAST/EiJ	MGP_CASTEiJ_G0032166	protein coding gene	Chr7:134072074-134112993 (-)
CBA/J	MGP_CBAJ_G0032809	protein coding gene	Chr7:152604387-152645398 (-)
DBA/2J	MGP_DBA2J_G0032961	protein coding gene	Chr7:136313748-136352852 (-)
FVB/NJ	MGP_FVBNJ_G0032914	protein coding gene	Chr7:136171482-136207368 (-)
LP/J	MGP_LPJ_G0033055	protein coding gene	Chr7:143846742-143886571 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0032946	protein coding gene	Chr7:153378293-153417204 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0033653	protein coding gene	Chr7:141065877-141102061 (-)
PWK/PhJ	MGP_PWKPhJ_G0031872	protein coding gene	Chr7:129466571-129503352 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0031717	protein coding gene	Chr7:127820207-127859260 (-)
WSB/EiJ	MGP_WSBEiJ_G0032277	protein coding gene	Chr7:141946861-141990294 (-)

Homology

• Human Ortholog
  C10orf143, chromosome 10 open reading frame 143

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  C10orf143, chromosome 10 open reading frame 143
  
• Synonyms
  LINC00959
• Links
  HGNC:48677

  NCBI Gene ID: 387723

  UniProt: A0A1B0GUT2

  
  
• Chr Location
  10q26.3; chr10:130063896-130110817 (-)  GRCh38.p7

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• Alliance of Genome Resources
  9430038I01Rik stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: C10orf143
• Gene Tree
  9430038I01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  21
• Gene trapped
  20
• Targeted
  1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  26 strains or lines available

Expression

• Assay Results
  672
• cDNA Data
  25

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• 9430038I01Rik interacts with 376 markers (Mir1b, Mir7-1, Mir9-1, ...) View All

Sequences &
Gene Models

• All Sequences
  56
• RefSeq
  14
• UniProt
  3
• CCDS
  CCDS52424.1

• Ensembl
  ENSMUSG00000040139 (Evidence)
• NCBI Gene
  77252

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000040139	Ensembl Gene Model | MGI Sequence Detail	35189	C57BL/6J

Protein
Information

• UniProt
  3 Sequences
• Protein Ontology
  PR:000059657 uncharacterized protein C10orf143
  (term hierarchy)

Molecular
Reagents

• All nucleic 25

  cDNA 25

  
  

  Microarray probesets 7

References

• Summaries
  All 27

  Phenotypes 9
• Earliest
  J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 9430038I01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr75427	Chr7:137012700-137012712 (-)	-215 bp
Tssr75426	Chr7:137012678-137012699 (-)	-198 bp
Tssr75425	Chr7:137012657-137012667 (-)	-171 bp
Tssr75424	Chr7:137012446-137012490 (-)	23 bp
Tssr75423	Chr7:137012427-137012434 (-)	60 bp