About   Help   FAQ
Atp13a4 Gene Detail
Summary
  • Symbol
    Atp13a4
  • Name
    ATPase type 13A4
  • Synonyms
    4631413J11Rik, 9330174J19Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924456
    NCBI Gene: 224079
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:29395853-29544864 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 20.24 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1017 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924456
protein coding gene Chr16:29389103-29544864 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022705
protein coding gene Chr16:27243332-27377057 (-)
A/J MGP_AJ_G0022668
protein coding gene Chr16:25986014-26125642 (-)
AKR/J MGP_AKRJ_G0022642
protein coding gene Chr16:26969815-27114279 (-)
BALB/cJ MGP_BALBcJ_G0022672
protein coding gene Chr16:26171641-26312437 (-)
C3H/HeJ MGP_C3HHeJ_G0022437
protein coding gene Chr16:27076292-27225024 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023121
protein coding gene Chr16:27806216-27947761 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020639
protein coding gene Chr16:26447335-26578407 (-)
CAST/EiJ MGP_CASTEiJ_G0021965
protein coding gene Chr16:27148993-27288477 (-)
CBA/J MGP_CBAJ_G0022407
protein coding gene Chr16:28996633-29155181 (-)
DBA/2J MGP_DBA2J_G0022540
protein coding gene Chr16:25873703-26014501 (-)
FVB/NJ MGP_FVBNJ_G0022515
protein coding gene Chr16:25852273-25981267 (-)
LP/J MGP_LPJ_G0022607
protein coding gene Chr16:27041559-27192477 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022534
protein coding gene Chr16:28577717-28728682 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023133
protein coding gene Chr16:26919364-27066817 (-)
PWK/PhJ MGP_PWKPhJ_G0021704
protein coding gene Chr16:26167352-26298801 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021535
protein coding gene Chr16:26674407-26814309 (-)
WSB/EiJ MGP_WSBEiJ_G0022009
protein coding gene Chr16:26858223-27000707 (-)



Homology
more
  • Human Ortholog
    ATP13A4, ATPase 13A4
  • Vertebrate Orthologs
    8
  • Human Ortholog
    ATP13A4, ATPase 13A4
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 84239
    neXtProt AC: NX_Q4VNC1
    UniProt: Q4VNC1

  • Chr Location
    3q29; chr3:193398967-193581725 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038094 Ensembl Gene Model | MGI Sequence Detail 149012 C57BL/6J ±  kb
transcript ENSMUST00000182627 Ensembl | MGI Sequence Detail 4238 Not Applicable  
polypeptide ENSMUSP00000138479 Ensembl | MGI Sequence Detail 1193 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 20
    cDNA 18
    Primer pair 2

    Microarray probesets 3
Other
Accession IDs
less
MGI:1918030
References
more
  • Summaries
    All 24
    Developmental Gene Expression 2
    Gene Ontology 5
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:193641 Nakano Y, et al., A mutation in the Srrm4 gene causes alternative splicing defects and deafness in the Bronx waltzer mouse. PLoS Genet. 2012;8(10):e1002966

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
03/13/2019
MGI 6.13
The Jackson Laboratory