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Cep78 Gene Detail
Summary
  • Symbol
    Cep78
  • Name
    centrosomal protein 78
  • Synonyms
    5730599I05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924386
    NCBI Gene: 208518
  • Gene Overview
    MyGene.info: CEP78
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:15955774-15984989 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 19, 10.89 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    173 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924386
protein coding gene Chr19:15955770-15985016 (-)
129S1/SvImJ MGP_129S1SvImJ_G0024957
protein coding gene Chr19:13657409-13686444 (-)
A/J MGP_AJ_G0024934
protein coding gene Chr19:12864821-12895154 (-)
AKR/J MGP_AKRJ_G0024904
protein coding gene Chr19:13405869-13437111 (-)
BALB/cJ MGP_BALBcJ_G0024933
protein coding gene Chr19:12908409-12935889 (-)
C3H/HeJ MGP_C3HHeJ_G0024691
protein coding gene Chr19:13349810-13377660 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025375
protein coding gene Chr19:14220306-14249044 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0022794
protein coding gene Chr19:13330262-13359167 (-)
CAST/EiJ MGP_CASTEiJ_G0024159
protein coding gene Chr19:12918756-12946835 (-)
CBA/J MGP_CBAJ_G0024669
protein coding gene Chr19:14634579-14671829 (-)
DBA/2J MGP_DBA2J_G0024801
protein coding gene Chr19:12912731-12941517 (-)
FVB/NJ MGP_FVBNJ_G0024762
protein coding gene Chr19:12841772-12870087 (-)
LP/J MGP_LPJ_G0024885
protein coding gene Chr19:13656314-13688242 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0024789
protein coding gene Chr19:14598628-14627800 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025430
protein coding gene Chr19:13321192-13348697 (-)
PWK/PhJ MGP_PWKPhJ_G0023908
protein coding gene Chr19:12447248-12474994 (-)
SPRET/EiJ MGP_SPRETEiJ_G0023713
protein coding gene Chr19:12612791-12646815 (-)
WSB/EiJ MGP_WSBEiJ_G0024227
protein coding gene Chr19:13338667-13367087 (-)



Homology
more
  • Human Ortholog
    CEP78, centrosomal protein 78
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CEP78, centrosomal protein 78
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C9orf81, CRDHL, IP63
  • Links
    NCBI Gene ID: 84131
    neXtProt AC: NX_Q5JTW2
    UniProt: Q5JTW2

  • Chr Location
    9q21.2; chr9:78236062-78278431 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 11030
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CEP78
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000041491 Ensembl Gene Model | MGI Sequence Detail 29216 C57BL/6J ±  kb
transcript ENSMUST00000047704 Ensembl | MGI Sequence Detail 2548 Not Applicable  
polypeptide ENSMUSP00000037596 Ensembl | MGI Sequence Detail 790 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 49
    cDNA 48
    Primer pair 1

    Microarray probesets 2
References
more
  • Summaries
    All 28
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:252169 Nikopoulos K, et al., Mutations in CEP78 Cause Cone-Rod Dystrophy and Hearing Loss Associated with Primary-Cilia Defects. Am J Hum Genet. 2016 Sep 1;99(3):770-776

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory