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5330439A09Rik Gene Detail
Summary
  • Symbol
    5330439A09Rik
  • Name
    RIKEN cDNA 5330439A09 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1924353
    NCBI Gene: 77103
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr8:54568550-54582512 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 29.27 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    254 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924353
lncRNA gene Chr8:54568550-54600987 (-)
129S1/SvImJ MGP_129S1SvImJ_G0004557
antisense lncRNA gene Chr8:54231450-54266521 (-)
A/J MGP_AJ_G0004537
antisense lncRNA gene Chr8:51952331-51985670 (-)
AKR/J MGP_AKRJ_G0004521
antisense lncRNA gene Chr8:53429005-53465606 (-)
BALB/cJ MGP_BALBcJ_G0004522
antisense lncRNA gene Chr8:52182667-52215359 (-)
C3H/HeJ MGP_C3HHeJ_G0004471
antisense lncRNA gene Chr8:54122335-54154819 (-)
C57BL/6NJ MGP_C57BL6NJ_G0004672
antisense lncRNA gene Chr8:56241425-56274887 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0004124
antisense lncRNA gene Chr8:47783264-47814517 (-)
CAST/EiJ MGP_CASTEiJ_G0004431
antisense lncRNA gene Chr8:53744517-53780082 (-)
CBA/J MGP_CBAJ_G0004465
antisense lncRNA gene Chr8:58297728-58336625 (-)
DBA/2J MGP_DBA2J_G0004481
antisense lncRNA gene Chr8:51753164-51785170 (-)
FVB/NJ MGP_FVBNJ_G0004497
antisense lncRNA gene Chr8:51092663-51125152 (-)
LP/J MGP_LPJ_G0004561
antisense lncRNA gene Chr8:54213095-54246526 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0004486
antisense lncRNA gene Chr8:59508784-59551654 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0004671
antisense lncRNA gene Chr8:53716801-53751999 (-)
PWK/PhJ MGP_PWKPhJ_G0004383
antisense lncRNA gene Chr8:51290057-51322977 (-)
SPRET/EiJ MGP_SPRETEiJ_G0004325
antisense lncRNA gene Chr8:52803486-52837314 (-)
WSB/EiJ MGP_WSBEiJ_G0004470
antisense lncRNA gene Chr8:53963398-54000603 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 77103 NCBI Gene Model | MGI Sequence Detail 13963 C57BL/6J ±  kb
transcript AK019937 GenBank | EMBL | DDBJ | MGI Sequence Detail 1121 C57BL/6J  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 10
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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Funding Information
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last database update
09/10/2019
MGI 6.14
The Jackson Laboratory