About   Help   FAQ
Ocel1 Gene Detail
Summary
  • Symbol
    Ocel1
  • Name
    occludin/ELL domain containing 1
  • Synonyms
    9430098E02Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924340
    NCBI Gene: 77090
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:71823942-71826333 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 34.43 cM, cytoband C1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    36 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924340
protein coding gene Chr8:71823942-71832005 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033740
protein coding gene Chr8:71760963-71769049 (+)
A/J MGP_AJ_G0033723
protein coding gene Chr8:68842685-68850748 (+)
AKR/J MGP_AKRJ_G0033648
protein coding gene Chr8:70861717-70869804 (+)
BALB/cJ MGP_BALBcJ_G0033719
protein coding gene Chr8:69008727-69016813 (+)
C3H/HeJ MGP_C3HHeJ_G0033429
protein coding gene Chr8:71446330-71454416 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034237
protein coding gene Chr8:74503622-74511685 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031179
protein coding gene Chr8:63478763-63486834 (+)
CAST/EiJ MGP_CASTEiJ_G0032754
protein coding gene Chr8:70899596-70907668 (+)
CBA/J MGP_CBAJ_G0033407
protein coding gene Chr8:77120578-77128664 (+)
DBA/2J MGP_DBA2J_G0033561
protein coding gene Chr8:68570439-68578525 (+)
FVB/NJ MGP_FVBNJ_G0033503
protein coding gene Chr8:67648459-67656545 (+)
LP/J MGP_LPJ_G0033648
protein coding gene Chr8:71738614-71746700 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033550
protein coding gene Chr8:79699946-79708044 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034254
protein coding gene Chr8:70931750-70939836 (+)
PWK/PhJ MGP_PWKPhJ_G0032461
protein coding gene Chr8:67842909-67850973 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032298
protein coding gene Chr8:69894248-69902254 (+)
WSB/EiJ MGP_WSBEiJ_G0032869
protein coding gene Chr8:71280805-71288891 (+)



Homology
more
  • Human Ortholog
    OCEL1, occludin/ELL domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    OCEL1, occludin/ELL domain containing 1
  • Synonyms
    FWP009, S863-9
  • Links
    NCBI Gene ID: 79629
    neXtProt AC: NX_Q9H607
    UniProt: Q9H607

  • Chr Location
    19p13.11; chr19:17226204-17229219 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 77090 NCBI Gene Model | MGI Sequence Detail 2392 C57BL/6J ±  kb
transcript NM_029865 RefSeq | MGI Sequence Detail 1652 C57BL/6  
polypeptide Q8VCR9 UniProt | EBI | MGI Sequence Detail 219 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 4
Other
Accession IDs
less
MGI:2142513, MGI:2142588
References
more
  • Summaries
    All 28
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
09/14/2021
MGI 6.17
The Jackson Laboratory