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Ocel1 Gene Detail
Summary
  • Symbol
    Ocel1
  • Name
    occludin/ELL domain containing 1
  • Synonyms
    9430098E02Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924340
    NCBI Gene: 77090
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:71371298-71373689 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 34.43 cM, cytoband C1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    48 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924340
protein coding gene Chr8:71371298-71379361 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033740
protein coding gene Chr8:71760963-71769049 (+)
A/J MGP_AJ_G0033723
protein coding gene Chr8:68842685-68850748 (+)
AKR/J MGP_AKRJ_G0033648
protein coding gene Chr8:70861717-70869804 (+)
BALB/cJ MGP_BALBcJ_G0033719
protein coding gene Chr8:69008727-69016813 (+)
C3H/HeJ MGP_C3HHeJ_G0033429
protein coding gene Chr8:71446330-71454416 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034237
protein coding gene Chr8:74503622-74511685 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031179
protein coding gene Chr8:63478763-63486834 (+)
CAST/EiJ MGP_CASTEiJ_G0032754
protein coding gene Chr8:70899596-70907668 (+)
CBA/J MGP_CBAJ_G0033407
protein coding gene Chr8:77120578-77128664 (+)
DBA/2J MGP_DBA2J_G0033561
protein coding gene Chr8:68570439-68578525 (+)
FVB/NJ MGP_FVBNJ_G0033503
protein coding gene Chr8:67648459-67656545 (+)
LP/J MGP_LPJ_G0033648
protein coding gene Chr8:71738614-71746700 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033550
protein coding gene Chr8:79699946-79708044 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034254
protein coding gene Chr8:70931750-70939836 (+)
PWK/PhJ MGP_PWKPhJ_G0032461
protein coding gene Chr8:67842909-67850973 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032298
protein coding gene Chr8:69894248-69902254 (+)
WSB/EiJ MGP_WSBEiJ_G0032869
protein coding gene Chr8:71280805-71288891 (+)



Homology
more
  • Human Ortholog
    OCEL1, occludin/ELL domain containing 1
  • Vertebrate Orthologs
    7
  • Human Ortholog
    OCEL1, occludin/ELL domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    FWP009, S863-9
  • Links
    NCBI Gene ID: 79629
    neXtProt AC: NX_Q9H607
    UniProt: Q9H607

  • Chr Location
    19p13.11; chr19:17226204-17229219 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 77090 NCBI Gene Model | MGI Sequence Detail 2392 C57BL/6J ±  kb
transcript NM_029865 RefSeq | MGI Sequence Detail 1652 C57BL/6  
polypeptide Q8VCR9 UniProt | EBI | MGI Sequence Detail 219 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR031176 ELL/occludin family
    IPR031182 Occludin/ELL domain-containing protein 1
    IPR010844 Occludin homology domain
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 4
Other
Accession IDs
less
MGI:2142513, MGI:2142588
References
more
  • Summaries
    All 27
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory