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5930409G06Rik Gene Detail
Summary
  • Symbol
    5930409G06Rik
  • Name
    RIKEN cDNA 5930409G06 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1924316
    NCBI Gene: 77066
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr3:45227859-45229402 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    12 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924316
 lncRNA gene Chr3:45227859-45229402 (-)
129S1/SvImJ MGP_129S1SvImJ_G0001117
 unclassified gene Chr3:43432388-43434826 (-)
A/J MGP_AJ_G0001097
 unclassified gene Chr3:42290742-42292286 (-)
AKR/J MGP_AKRJ_G0001083
 unclassified gene Chr3:43096361-43097904 (-)
BALB/cJ MGP_BALBcJ_G0001090
 unclassified gene Chr3:42095149-42096783 (-)
C3H/HeJ MGP_C3HHeJ_G0001071
 unclassified gene Chr3:43228363-43230878 (-)
C57BL/6NJ MGP_C57BL6NJ_G0001205
 unclassified gene Chr3:45254691-45257646 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0000925
 unclassified gene Chr3:39431245-39432768 (-)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0001062
 unclassified gene Chr3:46520969-46522513 (-)
DBA/2J MGP_DBA2J_G0001066
 unclassified gene Chr3:41931473-41933286 (-)
FVB/NJ MGP_FVBNJ_G0001077
 unclassified gene Chr3:41072009-41073552 (-)
LP/J MGP_LPJ_G0001125
 unclassified gene Chr3:44168648-44169988 (-)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0001196
 unclassified gene Chr3:43011555-43013136 (-)
PWK/PhJ MGP_PWKPhJ_G0001012
 unclassified gene Chr3:41417748-41422119 (-)
SPRET/EiJ MGP_SPRETEiJ_G0000988
 unclassified gene Chr3:42597777-42599329 (-)
WSB/EiJ MGP_WSBEiJ_G0001070
 unclassified gene Chr3:43041603-43043143 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
  • All Sequences
    19
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000103477 Ensembl Gene Model | MGI Sequence Detail 1544 C57BL/6J ±  kb
transcript AK020028 GenBank | ENA | DDBJ | MGI Sequence Detail 1547 C57BL/6J  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 1
References
more
  • Summaries
    All 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory