1700109H08Rik Gene Detail

Summary

• Symbol
  1700109H08Rik
• Name
  RIKEN cDNA 1700109H08 gene

• Feature Type
  protein coding gene
• IDs
  MGI:1924286
  NCBI Gene: 77036
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr5:3621716-3634341 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 2.24 cM, cytoband A2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  409 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924286	protein coding gene	Chr5:3621566-3634356 (+)
129S1/SvImJ	ENSMUSG00200002206	protein coding gene	Chr5:218295-231067 (+)
A/J	ENSMUSG00195007138	protein coding gene	Chr5:286690-299484 (+)
AKR/J	ENSMUSG00220001977	protein coding gene	Chr5:218329-231119 (+)
BALB/cJ	ENSMUSG00180015448	protein coding gene	Chr5:47891-60663 (+)
C3H/HeJ	ENSMUSG00175026440	protein coding gene	Chr5:223518-236310 (+)
C57BL/6NJ	ENSMUSG00215012367	protein coding gene	Chr5:527565-540352 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0026931	protein coding gene	Chr5:309935-325607 (+)
CAST/EiJ	ENSTCUG00005001518	protein coding gene	Chr5:436739-452442 (+)
CBA/J	ENSMUSG00210002350	protein coding gene	Chr5:588209-601001 (+)
DBA/2J	ENSMUSG00185027563	protein coding gene	Chr5:591854-604644 (+)
FVB/NJ	ENSMUSG00205006649	protein coding gene	Chr5:283841-299430 (+)
JF1/MsJ	ENSUMUG00000001231	protein coding gene	Chr5:605043-620636 (+)
LP/J	ENSMUSG00230002938	protein coding gene	Chr5:4462840-4475612 (+)
NOD/ShiLtJ	ENSMUSG00190011225	protein coding gene	Chr5:219581-235174 (+)
NZO/HlLtJ	ENSMUSG00225006448	protein coding gene	Chr5:8298353-8311142 (+)
PWK/PhJ	ENSLUMG00010019355	protein coding gene	Chr5:569562-585216 (+)
SPRET/EiJ	ENSMSPG00010004812	protein coding gene	Chr5:411678-427231 (+)
WSB/EiJ	ENSIUOG00005025218	protein coding gene	Chr5:281315-294101 (+)

Homology

• MGI Vertebrate Homology
  1700109H08Rik stringent orthology
  1 mouse;1 rat;1 zebrafish
  
• Gene Tree
  1700109H08Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  8 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  2
• GO References
  2

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  2
• UniProt
  5
• CCDS
  CCDS39001.1

• Ensembl
  ENSMUSG00000008307 (Evidence)
• NCBI Gene
  77036

Representative Sequences			Length	Strain/Species
genomic	77036	NCBI Gene Model | MGI Sequence Detail	12626	C57BL/6J
transcript	NM_029843	RefSeq | MGI Sequence Detail	715	C57BL/6
polypeptide	NP_084119	RefSeq | MGI Sequence Detail	210	C57BL/6

Protein
Information

• UniProt
  5 Sequences
• InterPro Domains
  IPR018247 EF-Hand 1, calcium-binding site
  IPR002048 EF-hand domain
  IPR011992 EF-hand domain pair
  IPR028846 Recoverin family

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 16

  Gene Ontology 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700109H08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1413	Chr5:3621560-3621564 (+)	-154 bp
Tssr45056	Chr5:3621572-3621580 (+)	-140 bp
Tssr45057	Chr5:3621590-3621610 (+)	-116 bp
Tssr45058	Chr5:3621664-3621671 (+)	-48 bp
Tssr45059	Chr5:3621676-3621692 (+)	-32 bp
Tssr45060	Chr5:3628207-3628223 (+)	6,499 bp