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Col25a1
Gene Detail
Symbol

Name
ID
Col25a1
collagen, type XXV, alpha 1
MGI:1924268
Synonyms
2700062B08Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 3
59.99 cM, cytoband H1
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr3:130180891-130599877 bp, + strand
From VEGA annotation of GRCm38

  418987 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:57111  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: COL25A1
Gene Tree: Col25a1

Human
homologs
COL25A1, collagen, type XXV, alpha 1
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 84570
neXtProt AC: NX_Q9BXS0

Human Synonyms: AMY, CFEOM5, CLAC, CLACP, CLAC-P

Human Chr (Location): 4q25; chr4:108808725-109302752 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human COL25A1

Mutations,
alleles, and
phenotypes
All mutations/alleles(1) : Transgenic(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Col25a1 interacts with 353 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process axonogenesis involved in innervation
Component collagen trimer, extracellular region, ...
Function beta-amyloid binding, heparin binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
cDNA source data(8)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase col25a1.2    NEW 
Molecular
reagents
All nucleic(8) cDNA(8)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000022680 (Evidence)
Ensembl Gene Model ENSMUSG00000058897 (Evidence)
Entrez Gene 77018 (Evidence)
DFCI TC1588272, TC1638836, TC1598812, TC1629113, TC1618052, TC1610615
DoTS DT.91334993, DT.55281173, DT.55230741, DT.101255856, DT.91331565
Consensus CDS Project CCDS38636.1, CCDS38637.1
International Mouse Phenotyping Consortium Status Col25a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022680 VEGA Gene Model | MGI Sequence Detail 418987 C57BL/6J ±  kb
transcript OTTMUST00000054365 VEGA | MGI Sequence Detail 2624 Not Applicable 
polypeptide OTTMUSP00000025948 VEGA | MGI Sequence Detail 666 Not Applicable 

For the selected sequences
All sequences(95) RefSeq(52) UniProt(5)
Polymorphisms
SNPs within 2kb(3076 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008160 Collagen triple helix repeat
Protein Ontology PR:000005709 collagen alpha-1(XXV) chain
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:206855 Tanaka T, et al., CLAC-P/collagen type XXV is required for the intramuscular innervation of motoneurons during neuromuscular development. J Neurosci. 2014 Jan 22;34(4):1370-9
All references(24)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/30/2015
MGI 5.22
The Jackson Laboratory