Usp46os2 Gene Detail

Summary

• Symbol
  Usp46os2
• Name
  ubiquitin specific peptidase 46, opposite strand 2
• Synonyms
  1700112M01Rik, 4933411J23Rik, Gm15805

• Feature Type
  lncRNA gene
• IDs
  MGI:1924246
  NCBI Gene: 108169050
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:74192929-74200664 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 39.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924246	lncRNA gene	Chr5:74192929-74200664 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015604	unclassified non-coding RNA gene	Chr5:74071233-74081094 (+)
A/J	MGP_AJ_G0015580	unclassified non-coding RNA gene	Chr5:71289268-71296993 (+)
AKR/J	MGP_AKRJ_G0015544	unclassified non-coding RNA gene	Chr5:73605825-73614896 (+)
BALB/cJ	MGP_BALBcJ_G0015542	unclassified non-coding RNA gene	Chr5:71997888-72005741 (+)
C3H/HeJ	MGP_C3HHeJ_G0015364	unclassified non-coding RNA gene	Chr5:73996061-74004816 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015996	unclassified non-coding RNA gene	Chr5:77098846-77106599 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013731	unclassified non-coding RNA gene	Chr5:66956721-66964399 (+)
CAST/EiJ	MGP_CASTEiJ_G0014920	unclassified non-coding RNA gene	Chr5:73068895-73077146 (+)
CBA/J	MGP_CBAJ_G0015345	unclassified non-coding RNA gene	Chr5:79632015-79639759 (+)
DBA/2J	MGP_DBA2J_G0015439	unclassified non-coding RNA gene	Chr5:71358400-71366432 (+)
FVB/NJ	MGP_FVBNJ_G0015446	unclassified non-coding RNA gene	Chr5:70507619-70515328 (+)
LP/J	MGP_LPJ_G0015520	unclassified non-coding RNA gene	Chr5:74513973-74522857 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015469	unclassified non-coding RNA gene	Chr5:82908084-82917841 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016038	unclassified non-coding RNA gene	Chr5:73141325-73149146 (+)
PWK/PhJ	MGP_PWKPhJ_G0014705	unclassified non-coding RNA gene	Chr5:70332381-70340483 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014493	unclassified non-coding RNA gene	Chr5:72493692-72499738 (+)
WSB/EiJ	MGP_WSBEiJ_G0015024	unclassified non-coding RNA gene	Chr5:73437882-73447223 (+)

Homology

• Gene Tree
  Usp46os2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Usp46os2
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• UniProt
  1

• Ensembl
  ENSMUSG00000086234 (Evidence)
• NCBI Gene
  108169050

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086234	Ensembl Gene Model | MGI Sequence Detail	7736	C57BL/6J
transcript	ENSMUST00000152787	Ensembl | MGI Sequence Detail	831	Not Applicable
polypeptide	Q9CRD1	UniProt | EBI | MGI Sequence Detail	103	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:1918434, MGI:3801998

References

• Summaries
  All 31

  Phenotypes 17
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for Usp46os2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46665	Chr5:74192925-74192934 (+)	1 bp