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Rbm17 Gene Detail
Summary
  • Symbol
    Rbm17
  • Name
    RNA binding motif protein 17
  • Synonyms
    2700027J02Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924188
    NCBI Gene: 76938
  • Gene Overview
    MyGene.info: RBM17
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:11585439-11603199 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 8.85 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    80 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924188
protein coding gene Chr2:11585437-11604153 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025344
protein coding gene Chr2:9003073-9022260 (-)
A/J MGP_AJ_G0025321
protein coding gene Chr2:8619593-8637856 (-)
AKR/J MGP_AKRJ_G0025290
protein coding gene Chr2:8932352-8950806 (-)
BALB/cJ MGP_BALBcJ_G0025317
protein coding gene Chr2:8595857-8614847 (-)
C3H/HeJ MGP_C3HHeJ_G0025077
protein coding gene Chr2:8842038-8861618 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025759
protein coding gene Chr2:9240250-9260494 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023173
protein coding gene Chr2:8058534-8077105 (-)
CAST/EiJ MGP_CASTEiJ_G0024540
protein coding gene Chr2:8872360-8892585 (-)
CBA/J MGP_CBAJ_G0025056
protein coding gene Chr2:9621127-9641422 (-)
DBA/2J MGP_DBA2J_G0025188
protein coding gene Chr2:8539606-8557874 (-)
FVB/NJ MGP_FVBNJ_G0025150
protein coding gene Chr2:8461136-8480860 (-)
LP/J MGP_LPJ_G0025274
protein coding gene Chr2:8914008-8934963 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025182
protein coding gene Chr2:9517316-9535377 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025817
protein coding gene Chr2:8849585-8868376 (-)
PWK/PhJ MGP_PWKPhJ_G0024291
protein coding gene Chr2:8511236-8530410 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024091
protein coding gene Chr2:8840973-8859572 (-)
WSB/EiJ MGP_WSBEiJ_G0024610
protein coding gene Chr2:8917204-8937294 (-)



Homology
more
  • Human Ortholog
    RBM17, RNA binding motif protein 17
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RBM17, RNA binding motif protein 17
    Orthology source: HomoloGene, HGNC
  • Synonyms
    SPF45
  • Links
    NCBI Gene ID: 84991
    neXtProt AC: NX_Q96I25
    UniProt: Q96I25

  • Chr Location
    10p15.1; chr10:6088986-6117459 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 76938 NCBI Gene Model | MGI Sequence Detail 17761 C57BL/6J ±  kb
transcript NM_152824 RefSeq | MGI Sequence Detail 1583 C57BL/6  
polypeptide Q8JZX4 UniProt | EBI | MGI Sequence Detail 405 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 70
    cDNA 68
    Primer pair 1
    Other 1

    Microarray probesets 3
References
more
  • Summaries
    All 34
    Developmental Gene Expression 3
    Gene Ontology 7
    Phenotypes 9
  • Earliest
    J:48892 Neubauer G, et al., Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex [see comments]. Nat Genet. 1998 Sep;20(1):46-50
  • Latest
    J:239305 Tan Q, et al., Extensive cryptic splicing upon loss of RBM17 and TDP43 in neurodegeneration models. Hum Mol Genet. 2016 Dec 1;25(23):5083-5093

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory