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1700021F13Rik Gene Detail
Summary
  • Symbol
    1700021F13Rik
  • Name
    RIKEN cDNA 1700021F13 gene
  • Synonyms
    linc1405, LncCMRR
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1924176
    NCBI Gene: 76926
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:119943392-119945934 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    15 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924176
 lncRNA gene Chr5:119943392-119945934 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006792
 lincRNA gene Chr5:123108403-123110919 (-)
A/J MGP_AJ_G0006786
 lincRNA gene Chr5:118032089-118034609 (-)
AKR/J MGP_AKRJ_G0006756
 lincRNA gene Chr5:121847767-121850311 (-)
BALB/cJ MGP_BALBcJ_G0006762
 lincRNA gene Chr5:119454387-119456907 (-)
C3H/HeJ MGP_C3HHeJ_G0006707
 lincRNA gene Chr5:122382315-122384869 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006927
 lincRNA gene Chr5:127753668-127756204 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006182
 lincRNA gene Chr5:112760490-112763017 (-)
CAST/EiJ MGP_CASTEiJ_G0006630
 lincRNA gene Chr5:121467802-121470338 (-)
CBA/J MGP_CBAJ_G0006689
 lincRNA gene Chr5:132720396-132722934 (-)
DBA/2J MGP_DBA2J_G0006709
 lincRNA gene Chr5:118134609-118137125 (-)
FVB/NJ MGP_FVBNJ_G0006733
 lincRNA gene Chr5:117035528-117038068 (-)
LP/J MGP_LPJ_G0006793
 lincRNA gene Chr5:123586128-123588636 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006716
 lincRNA gene Chr5:136733893-136736433 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006929
 lincRNA gene Chr5:121415363-121417917 (-)
PWK/PhJ MGP_PWKPhJ_G0006569
 lincRNA gene Chr5:116877930-116880549 (-)
SPRET/EiJ MGP_SPRETEiJ_G0006475
 lincRNA gene Chr5:119059233-119061733 (-)
WSB/EiJ MGP_WSBEiJ_G0006681
 lincRNA gene Chr5:122004014-122006544 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving 1700021F13Rik
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
  • Literature Summary
    2
Sequences &
Gene Models
less
  • All Sequences
    23
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000107053 Ensembl Gene Model | MGI Sequence Detail 2543 C57BL/6J ±  kb
transcript ENSMUST00000202665 Ensembl | MGI Sequence Detail 469 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2
References
more
  • Summaries
    All 14
    Developmental Gene Expression 2
    Phenotypes 5
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:344873 Yang Y, et al., LncCMRR Plays an Important Role in Cardiac Differentiation by Regulating the Purb/Flk1 Axis. Stem Cells. 2023 Jan 30;41(1):11-25
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory