1700021A07Rik Gene Detail

Summary

• Symbol
  1700021A07Rik
• Name
  RIKEN cDNA 1700021A07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924174
  NCBI Gene: 76924
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:21295163-21316179 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 9.76 cM, cytoband A3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  857 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924174	lncRNA gene	Chr10:21295163-21316179 (+)
129S1/SvImJ	ENSMUSG00200011428	lncRNA gene	Chr10:18284621-18291797 (+)
A/J	ENSMUSG00195007247	lncRNA gene	Chr10:18296755-18303931 (+)
AKR/J	ENSMUSG00220010385	lncRNA gene	Chr10:18208138-18215347 (+)
BALB/cJ	ENSMUSG00180015912	lncRNA gene	Chr10:18420997-18428173 (+)
C3H/HeJ	ENSMUSG00175020804	lncRNA gene	Chr10:18443394-18450601 (+)
C57BL/6NJ	ENSMUSG00215003930	lncRNA gene	Chr10:18250516-18257724 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004625	lincRNA gene	Chr10:17453714-17459938 (+)
CAST/EiJ	ENSTCUG00005030612	lncRNA gene	Chr10:18205847-18213043 (+)
CBA/J	ENSMUSG00210015572	lncRNA gene	Chr10:18380496-18387703 (+)
DBA/2J	ENSMUSG00185007285	lncRNA gene	Chr10:18365491-18372698 (+)
FVB/NJ	ENSMUSG00205020839	lncRNA gene	Chr10:18277902-18285080 (+)
JF1/MsJ	ENSUMUG00000015022	lncRNA gene	Chr10:18423149-18430385 (+)
LP/J	ENSMUSG00230018665	lncRNA gene	Chr10:20018640-20025815 (+)
NOD/ShiLtJ	ENSMUSG00190010824	lncRNA gene	Chr10:18355861-18363038 (+)
NZO/HlLtJ	ENSMUSG00225030659	lncRNA gene	Chr10:24506230-24513458 (+)
PWK/PhJ	ENSLUMG00010015544	lncRNA gene	Chr10:18184623-18191849 (+)
SPRET/EiJ	ENSMSPG00010011170	lncRNA gene	Chr10:18824341-18833140 (+)
WSB/EiJ	ENSIUOG00005023510	lncRNA gene	Chr10:17987141-17994357 (+)

Homology

• Gene Tree
  1700021A07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1700021A07Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• UniProt
  1

• Ensembl
  ENSMUSG00000037535 (Evidence)
• NCBI Gene
  76924

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000037535	Ensembl Gene Model | MGI Sequence Detail	21017	C57BL/6J
transcript	ENSMUST00000187763	Ensembl | MGI Sequence Detail	1531	Not Applicable
polypeptide	Q9DA46	UniProt | EBI | MGI Sequence Detail	102	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 1700021A07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92636	Chr10:21295342-21295359 (+)	188 bp
Tssr92637	Chr10:21295367-21295380 (+)	211 bp