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Rnft1 Gene Detail
Summary
  • Symbol
    Rnft1
  • Name
    ring finger protein, transmembrane 1
  • Synonyms
    0610013E23Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924142
    NCBI Gene: 76892
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:86484657-86499007 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 51.82 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    54 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924142
protein coding gene Chr11:86484657-86499025 (+)
129S1/SvImJ MGP_129S1SvImJ_G0018889
protein coding gene Chr11:88041278-88057684 (+)
A/J MGP_AJ_G0018856
protein coding gene Chr11:84653311-84672294 (+)
AKR/J MGP_AKRJ_G0018826
protein coding gene Chr11:87189809-87205605 (+)
BALB/cJ MGP_BALBcJ_G0018829
protein coding gene Chr11:85045218-85059888 (+)
C3H/HeJ MGP_C3HHeJ_G0018643
protein coding gene Chr11:87219468-87234381 (+)
C57BL/6NJ MGP_C57BL6NJ_G0019281
protein coding gene Chr11:90710008-90724377 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016914
protein coding gene Chr11:81688478-81702751 (+)
CAST/EiJ MGP_CASTEiJ_G0018198
protein coding gene Chr11:87899828-87916239 (+)
CBA/J MGP_CBAJ_G0018614
protein coding gene Chr11:94522684-94539244 (+)
DBA/2J MGP_DBA2J_G0018722
protein coding gene Chr11:84229263-84244461 (+)
FVB/NJ MGP_FVBNJ_G0018711
protein coding gene Chr11:83732496-83747031 (+)
LP/J MGP_LPJ_G0018792
protein coding gene Chr11:88532641-88549476 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0018738
protein coding gene Chr11:94632228-94647733 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0019321
protein coding gene Chr11:87437080-87451601 (+)
PWK/PhJ MGP_PWKPhJ_G0017967
protein coding gene Chr11:85025513-85039523 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017759
protein coding gene Chr11:86988369-87006444 (+)
WSB/EiJ MGP_WSBEiJ_G0018249
protein coding gene Chr11:87309472-87324303 (+)



Homology
more
  • Human Ortholog
    RNFT1, ring finger protein, transmembrane 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    RNFT1, ring finger protein, transmembrane 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PTD016
  • Links
    NCBI Gene ID: 51136
    neXtProt AC: NX_Q5M7Z0
    UniProt: Q5M7Z0

  • Chr Location
    17q23.1; chr17:59952362-59964756 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 76892 NCBI Gene Model | MGI Sequence Detail 14351 C57BL/6J ±  kb
transcript NM_029788 RefSeq | MGI Sequence Detail 4434 C57BL/6  
polypeptide Q9DCN7 UniProt | EBI | MGI Sequence Detail 395 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 5
Other
Accession IDs
less
MGI:2144450
References
more
  • Summaries
    All 30
    Gene Ontology 2
    Phenotypes 10
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory