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Hyls1
Gene Detail
 Symbol
Name
ID
Hyls1
hydrolethalus syndrome 1
MGI:1924082
Synonyms 3010015K02Rik
Feature Type protein coding gene
Genetic Map
Chromosome 9
20.32 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr9:35560820-35570398 bp, - strand
From VEGA annotation of GRCm38

  9579 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:82283  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Hyls1

Human
homologs
Human Homolog HYLS1, hydrolethalus syndrome 1
NCBI Gene ID 219844
neXtProt AC  NX_Q96M11
Human Synonyms  HLS
Human Chr (Location)  11q24.2; chr11:125883614-125900646 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human HYLS1
Mutations,
alleles, and
phenotypes
All mutations/alleles(14) : Gene trapped(10) Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Hyls1 interacts with 69 markers (Mir7-1, Mir9-1, Mir9-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process biological_process
Component centrosome, cytoplasm, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (51)    Tissues (41)   
Theiler Stages: 10, 18, 20, 23, 25, 28
Assay TypeResults
RNA in situ 41
Northern blot 4
RT-PCR 6
cDNA source data(5)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(8) cDNA(6) Primer pair(2)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000030728 (Evidence)
Ensembl Gene ModelENSMUSG00000050555 (Evidence)
Entrez Gene76832 (Evidence)
DFCITC1586780
DoTSDT.55189348
NIA Mouse Gene IndexU030670
Consensus CDS ProjectCCDS52754.1
International Mouse Knockout Project StatusHyls1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000030728 VEGA Gene Model | MGI Sequence Detail 9579 C57BL/6J ±  kb
transcript OTTMUST00000076069 VEGA | MGI Sequence Detail 1973 Not Applicable 
polypeptide OTTMUSP00000039979 VEGA | MGI Sequence Detail 314 Not Applicable 

For the selected sequences
All sequences(20) RefSeq(2) UniProt(1)
Polymorphisms SNPs within 2kb(85 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR026227 Hydrolethalus syndrome protein 1
Protein Ontology PR:000008852 hydrolethalus syndrome protein 1
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(28)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory