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Hyls1
Gene Detail
Symbol

Name
ID
Hyls1
hydrolethalus syndrome 1
MGI:1924082
Synonyms
3010015K02Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 9
20.32 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr9:35560820-35570398 bp, - strand
From VEGA annotation of GRCm38

  9579 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:82283  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

HCOP human homology predictions: HYLS1
Gene Tree: Hyls1

Human
homologs
HYLS1, hydrolethalus syndrome 1
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 219844
neXtProt AC: NX_Q96M11

Human Synonyms: HLS

Human Chr (Location): 11q24.2; chr11:125883614-125900646 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human HYLS1

Mutations,
alleles, and
phenotypes
All mutations/alleles(14) : Gene trapped(10) Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Hyls1 interacts with 68 markers (Mir7-1, Mir9-1, Mir9-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process biological_process
Component centrosome, cytoplasm, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (51)    Tissues (42)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 41
Northern blot 4
RT-PCR 6
cDNA source data(5)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(8) cDNA(6) Primer pair(2)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000030728 (Evidence)
Ensembl Gene Model ENSMUSG00000050555 (Evidence)
Entrez Gene 76832 (Evidence)
DFCI TC1586780
DoTS DT.55189348
NIA Mouse Gene Index U030670
Consensus CDS Project CCDS52754.1
International Mouse Phenotyping Consortium Status Hyls1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000030728 VEGA Gene Model | MGI Sequence Detail 9579 C57BL/6J ±  kb
transcript OTTMUST00000076069 VEGA | MGI Sequence Detail 1973 Not Applicable 
polypeptide OTTMUSP00000039979 VEGA | MGI Sequence Detail 314 Not Applicable 

For the selected sequences
All sequences(20) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(85 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR026227 Hydrolethalus syndrome protein 1
InterPro IPR027918 Hydrolethalus syndrome protein 1, C-terminal domain
Protein Ontology PR:000008852 hydrolethalus syndrome protein 1
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(27)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory