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Kdm4c
Gene Detail
Symbol

Name
ID
Kdm4c
lysine (K)-specific demethylase 4C
MGI:1924054
Synonyms
2410141F18Rik, Jmjd2c
Feature Type
protein coding gene
Genetic Map
Chromosome 4
36.06 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr4:74242497-74405860 bp, + strand
From VEGA annotation of GRCm38

  163364 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:41004  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Kdm4c

Human
homologs
Human Homolog KDM4C, lysine (K)-specific demethylase 4C
NCBI Gene ID 23081
neXtProt AC  NX_Q9H3R0
Human Synonyms  bA146B14.1, GASC1, JHDM3C, JMJD2C, TDRD14C
Human Chr (Location)  9p24.1; chr9:6720863-7175648 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(579) : Gene trapped(577) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Kdm4c interacts with 223 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (8 records)
Data Summary: Results (104)    Tissues (42)    Images (17)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 44
RT-PCR 60
cDNA source data(74)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(78) cDNA(75) Primer pair(3)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000000345 (Evidence)
Ensembl Gene ModelENSMUSG00000028397 (Evidence)
Entrez Gene76804 (Evidence)
UniGene209059
DFCITC1578807, TC1608455, TC1612026, TC1635778, TC1680036
DoTSDT.40185393, DT.91423397, DT.91571215, DT.91590136, DT.94132437, DT.94288090
NIA Mouse Gene IndexU004433, U308726
EC1.14.11.-
Consensus CDS ProjectCCDS18287.1
International Mouse Knockout Project StatusKdm4c
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000000345 VEGA Gene Model | MGI Sequence Detail 163364 C57BL/6J ±  kb
transcript OTTMUST00000000873 VEGA | MGI Sequence Detail 4196 Not Applicable 
polypeptide OTTMUSP00000000398 VEGA | MGI Sequence Detail 1054 Not Applicable 

For the selected sequences
All sequences(68) RefSeq(14) UniProt(4)
Polymorphisms
SNPs within 2kb(887 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR003347 JmjC domain
InterPro IPR003349 Transcription factor jumonji, JmjN
InterPro IPR002999 Tudor domain
InterPro IPR011011 Zinc finger, FYVE/PHD-type
InterPro IPR001965 Zinc finger, PHD-type
InterPro IPR013083 Zinc finger, RING/FYVE/PHD-type
Protein Ontology PR:000009215 lysine-specific demethylase 4C
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:205909 Das PP, et al., Distinct and combinatorial functions of Jmjd2b/Kdm4b and Jmjd2c/Kdm4c in mouse embryonic stem cell identity. Mol Cell. 2014 Jan 9;53(1):32-48
All references(54)
Other
accession IDs
MGI:2140158

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory