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Usp42
Gene Detail
 Symbol
Name
ID
Usp42
ubiquitin specific peptidase 42
MGI:1924050
Synonyms 2410140K03Rik, 3110031A07Rik, A630018G05Rik, D5Ertd591e
Feature Type protein coding gene
Genetic Map
Chromosome 5
82.50 cM, cytoband G2
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr5:143710325-143732280 bp, - strand
From VEGA annotation of GRCm38

  21956 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:35425  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

Gene Tree: Usp42

Human
homologs
Human Homolog USP42, ubiquitin specific peptidase 42
NCBI Gene ID 84132
neXtProt AC  NX_Q9H9J4
Human Chr (Location)  7p22.1; chr7:6088790-6161564 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Gene trapped(1) Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Usp42 interacts with 339 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process cell differentiation, protein deubiquitination, ...
Component cellular_component
Function cysteine-type peptidase activity, hydrolase activity, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (59)    Tissues (44)    Images (9)
Theiler Stages: 6, 8, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 28
Assay TypeResults
RNA in situ 20
Northern blot 39
cDNA source data(84)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(85) cDNA(84) Primer pair(1)
Microarray probesets(6)
Other database
links
VEGA Gene ModelOTTMUSG00000025563 (Evidence)
Ensembl Gene ModelENSMUSG00000051306 (Evidence)
Entrez Gene76800 (Evidence)
UniGene259620
DFCITC1626096, TC1635085, TC1662316, TC1672416
DoTSDT.101176906, DT.40151269, DT.40180803, DT.55192012, DT.97331825
NIA Mouse Gene IndexU026925
EC3.4.19.12
Consensus CDS ProjectCCDS39372.1
International Mouse Knockout Project StatusUsp42
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000025563 VEGA Gene Model | MGI Sequence Detail 21956 C57BL/6J ±  kb
transcript OTTMUST00000062875 VEGA | MGI Sequence Detail 5151 Not Applicable 
polypeptide OTTMUSP00000031056 VEGA | MGI Sequence Detail 1324 Not Applicable 

For the selected sequences
All sequences(63) RefSeq(8) UniProt(4)
Polymorphisms SNPs within 2kb(92 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
InterPro IPR018200 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
Protein Ontology PR:000017181 ubiquitin carboxyl-terminal hydrolase 42
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(37)
Other
accession IDs
MGI:1261892, MGI:1920429, MGI:2444457

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory