Tbc1d9b Gene Detail

Summary

• Symbol
  Tbc1d9b
• Name
  TBC1 domain family, member 9B
• Synonyms
  2700008N14Rik

• Feature Type
  protein coding gene
• IDs
  MGI:1924045
  NCBI Gene: 76795

Location & Maps

• Sequence Map
  Chr11:50131396-50172785 bp, + strand
• From VEGA annotation of GRCm38
  

  Mouse Genome Browser
  
  

• Download
  Sequence
    41390 bp   ±  kb flank
  
  
• Genome Browsers
  VEGA | Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 30.28 cM
• Mapping Data
  2 experiments

Homology

• Human Ortholog
  TBC1D9B, TBC1 domain family member 9B

• Vertebrate Orthologs
  8

• Human Ortholog
  TBC1D9B, TBC1 domain family member 9B
  Orthology source: HomoloGene, HGNC
• Synonyms
  GRAMD9B
• Links
  HGNC:29097

  NCBI Gene ID: 23061

  neXtProt AC: NX_Q66K14

  UniProt: Q66K14

  
  
• Chr Location
  5q35.3; chr5:179862071-179907856 (-)  GRCh38.p7

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• HomoloGene
  Vertebrate Homology Class 28106
  1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 frog, western clawed
  
• HCOP
  human homology predictions: TBC1D9B
• Gene Tree
  Tbc1d9b
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving Tbc1d9b
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  16 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  10
• GO References
  3

• External Resources
  FuncBase

Expression

• cDNA Data
  13

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas
• Other Vertebrate Links
  Xenbase tbc1d9b

Interactions

• Tbc1d9b interacts with 199 markers (Mir7-1, Mir7-2, Mir7b, ...) View All

Sequences &
Gene Models

• All Sequences
  150
• RefSeq
  13
• UniProt
  1
• CCDS
  CCDS36146.1, CCDS70175.1

• VEGA
  OTTMUSG00000005576 (Evidence)
• Ensembl
  ENSMUSG00000036644 (Evidence)
• NCBI Gene
  76795

Representative Sequences			Length	Strain/Species
genomic	OTTMUSG00000005576	VEGA Gene Model | MGI Sequence Detail	41390	C57BL/6J
transcript	OTTMUST00000012394	VEGA | MGI Sequence Detail	5213	Not Applicable
polypeptide	OTTMUSP00000005738	VEGA | MGI Sequence Detail	1263	Not Applicable

Polymorphisms

• SNPs within 2kb
  80 from dbSNP Build 142

Protein
Information

• UniProt
  1 Sequence
• Protein Ontology
  PR:000016124 TBC1 domain family member 9B
  (term hierarchy)
• InterPro Domains
  IPR002048 EF-hand domain
  IPR011992 EF-hand domain pair
  IPR004182 GRAM domain
  IPR011993 PH domain-like
  IPR000195 Rab-GTPase-TBC domain

Molecular
Reagents

• All nucleic 13

  cDNA 13

  
  

  Microarray probesets 5

Other
Accession IDs

MGI:2144393

References

• Summaries
  All 29

  Gene Ontology 3

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582