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2010005H15Rik Gene Detail
Summary
  • Symbol
    2010005H15Rik
  • Name
    RIKEN cDNA 2010005H15 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924020
    NCBI Gene: 76770
  • Gene Overview
    MyGene.info: CSTA
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:36221562-36257450 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 25.44 cM, cytoband B3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    227 from dbSNP Build 142
  • Strain Annotations
    13
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924020
protein coding gene Chr16:36221468-36257450 (.)
129S1/SvImJ MGP_129S1SvImJ_G0022787
protein coding gene Chr16:34778106-34792147 (-)
A/J MGP_AJ_G0022748
protein coding gene Chr16:32884800-32886508 (+)
AKR/J MGP_AKRJ_G0022722
protein coding gene Chr16:34106761-34126692 (+)
BALB/cJ MGP_BALBcJ_G0022752
protein coding gene Chr16:33158849-33163617 (-)
C3H/HeJ MGP_C3HHeJ_G0022516
protein coding gene Chr16:34282966-34302498 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023197
protein coding gene Chr16:35422876-35427159 (+)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0022486
protein coding gene Chr16:37127889-37134919 (-)
DBA/2J MGP_DBA2J_G0022619
protein coding gene Chr16:32796362-32815688 (+)
FVB/NJ MGP_FVBNJ_G0022595
protein coding gene Chr16:32980342-32985049 (-)
LP/J MGP_LPJ_G0022687
protein coding gene Chr16:34443157-34472582 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022612
protein coding gene Chr16:36014289-36016017 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023215
protein coding gene Chr16:34271527-34276224 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    CSTA, cystatin A
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CSTA, cystatin A
    Orthology source: HomoloGene, HGNC
  • Synonyms
    AREI, PSS4, STF1, STFA
  • Links
    NCBI Gene ID: 1475
    neXtProt AC: NX_P01040
    UniProt: P01040

  • Chr Location
    3q21.1; chr3:122325164-122341969 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 76770 NCBI Gene Model | MGI Sequence Detail 35889 C57BL/6J ±  kb
transcript NM_029733 RefSeq | MGI Sequence Detail 528 Not Specified  
polypeptide NP_084009 RefSeq | MGI Sequence Detail 97 Not Specified  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR000010 Cystatin domain
    IPR001713 Proteinase inhibitor I25A, stefin
    IPR018073 Proteinase inhibitor I25, cystatin, conserved site
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 3
References
more
  • Summaries
    All 18
    Gene Ontology 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory