Alpi MGI Mouse Gene Detail - MGI:1924018 - alkaline phosphatase, intestinal

Symbol

Alpi
Name

alkaline phosphatase, intestinal
Synonyms

2010001C14Rik

Feature Type

protein coding gene
IDs

MGI:1924018
NCBI Gene: 76768
Alliance

gene page
Transcription Start Sites

11 TSS

Sequence Map

Chr1:87098002-87101606 bp, - strand
From NCBI annotation of GRCm38

View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 1, 44.05 cM, cytoband C5
Mapping Data

3 experiments

SNPs within 2kb

27 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924018	protein coding gene	Chr1:87098002-87101606 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0016255	protein coding gene	Chr1:88430338-88433942 (-)
A/J	MGP_AJ_G0016236	protein coding gene	Chr1:85129935-85133539 (-)
AKR/J	MGP_AKRJ_G0016197	protein coding gene	Chr1:87643376-87646980 (-)
BALB/cJ	MGP_BALBcJ_G0016193	protein coding gene	Chr1:85249838-85253442 (-)
C3H/HeJ	MGP_C3HHeJ_G0016021	protein coding gene	Chr1:87903528-87907132 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016649	protein coding gene	Chr1:91780390-91783994 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0014371	protein coding gene	Chr1:79583356-79586980 (-)
CAST/EiJ	MGP_CASTEiJ_G0015606	protein coding gene	Chr1:87106400-87110034 (-)
CBA/J	MGP_CBAJ_G0015997	protein coding gene	Chr1:94640704-94644308 (-)
DBA/2J	MGP_DBA2J_G0016100	protein coding gene	Chr1:84433820-84437424 (-)
FVB/NJ	MGP_FVBNJ_G0016099	protein coding gene	Chr1:83496686-83500290 (-)
LP/J	MGP_LPJ_G0016171	protein coding gene	Chr1:89499562-89503166 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0016125	protein coding gene	Chr1:97929405-97933009 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016692	protein coding gene	Chr1:87745145-87748749 (-)
PWK/PhJ	MGP_PWKPhJ_G0015393	protein coding gene	Chr1:83731135-83734769 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0015173	protein coding gene	Chr1:86672612-86676246 (-)
WSB/EiJ	MGP_WSBEiJ_G0015670	protein coding gene	Chr1:87412721-87416325 (-)

Human Ortholog

ALPG, alkaline phosphatase, germ cell

Vertebrate Orthologs

4

Human Ortholog

ALPG, alkaline phosphatase, germ cell
Orthology source: HGNC
Synonyms

ALPPL, ALPPL2, GCAP
Links

HGNC:441

NCBI Gene ID: 251

neXtProt AC: NX_P10696

UniProt: P10696
Chr Location

2q37.1; chr2:232406842-232410714 (+) GRCh38.p7

Human Ortholog

ALPI, alkaline phosphatase, intestinal
Orthology source: HGNC
Synonyms

IAP
Links

HGNC:437

NCBI Gene ID: 248

neXtProt AC: NX_P09923

UniProt: P09923
Chr Location

2q37.1; chr2:232456112-232460745 (+) GRCh38.p7

Human Ortholog

ALPP, alkaline phosphatase, placental
Orthology source: HomoloGene
Synonyms

ALP, ALPI, IAP, PALP, PLAP, PLAP-1
Links

HGNC:439

NCBI Gene ID: 250

neXtProt AC: NX_P05187

UniProt: P05187
Chr Location

2q37.1; chr2:232378534-232382889 (+) GRCh38.p7

HomoloGene

Vertebrate Homology Class 122414
1 human;1 mouse;1 rat;1 chimpanzee
HCOP

human homology predictions: ALPG, ALPI, ALPP
Gene Tree

Alpi

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Phenotype Summary

5 phenotype references

All Mutations and Alleles

3
Chemically induced (other)

1
Radiation induced

1
Targeted

1
Genomic Mutations

2 involving Alpi
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

12 strains or lines available

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All GO Annotations

11
GO References

3

External Resources

FuncBase

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell death	cell differentiation	cell population proliferation	cellular component organization	establishment of localization	homeostatic process	immune system process	lipid metabolic process	nucleic acid-templated transcription	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

94
Tissues

94
cDNA Data

18
Literature Summary

6

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase alpi.1, alpi.2

ZFIN alpi.1, alpi.2

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Alpi interacts with 74 markers (Mir1b, Mir9-1, Mir9-2, ...) View All

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All Sequences

31
RefSeq

2
UniProt

2
CCDS

CCDS35650.1
UniGene

58068

Ensembl

ENSMUSG00000079440 (Evidence)
NCBI Gene

76768

			Length	Strain/Species	Flank
genomic	76768	NCBI Gene Model \| MGI Sequence Detail	3605	C57BL/6J	± kb
transcript	NM_001081082	RefSeq \| MGI Sequence Detail	2337	C57BL/6
polypeptide	NP_001074551	RefSeq \| MGI Sequence Detail	554	C57BL/6

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UniProt

2 Sequences
EC

3.1.3.1
InterPro Domains

IPR001952 Alkaline phosphatase

IPR018299 Alkaline phosphatase, active site

IPR017849 Alkaline phosphatase-like, alpha/beta/alpha

IPR017850 Alkaline-phosphatase-like, core domain superfamily

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All nucleic 19

cDNA 18

Primer pair 1

Microarray probesets 3

Summaries

All 35

Developmental Gene Expression 6

Gene Ontology 3

Phenotypes 5
Earliest

J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
Latest

J:263836 Srivillibhuthur M, et al., TFAM is required for maturation of the fetal and adult intestinal epithelium. Dev Biol. 2018 Jul 15;439(2):92-101

TSS for Alpi:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr12836	Chr1:87101715-87101719 (-)	-111 bp
Tssr12835	Chr1:87101630-87101636 (-)	-27 bp
Tssr12834	Chr1:87101590-87101617 (-)	2 bp
Tssr12833	Chr1:87101561-87101566 (-)	42 bp
Tssr12829	Chr1:87100316-87100354 (-)	1,271 bp
Tssr12828	Chr1:87100181-87100192 (-)	1,419 bp
Tssr12827	Chr1:87099734-87099747 (-)	1,865 bp
Tssr12826	Chr1:87099549-87099561 (-)	2,051 bp
Tssr12825	Chr1:87099525-87099535 (-)	2,076 bp
Tssr12824	Chr1:87099445-87099454 (-)	2,156 bp
Tssr12823	Chr1:87099419-87099428 (-)	2,182 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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