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5330411J11Rik Gene Detail
Summary
  • Symbol
    5330411J11Rik
  • Name
    RIKEN cDNA 5330411J11 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1923926
    NCBI Gene: 76676
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr2:59212837-59217026 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 33.72 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    59 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923926
 lncRNA gene Chr2:59212837-59217815 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015422
 unclassified non-coding RNA gene Chr2:58910022-58915740 (-)
A/J MGP_AJ_G0015397
 unclassified non-coding RNA gene Chr2:56632216-56637185 (-)
AKR/J MGP_AKRJ_G0015361
 unclassified non-coding RNA gene Chr2:58196880-58201849 (-)
BALB/cJ MGP_BALBcJ_G0015361
 unclassified non-coding RNA gene Chr2:56746379-56751342 (-)
C3H/HeJ MGP_C3HHeJ_G0015185
 unclassified non-coding RNA gene Chr2:58295454-58301053 (-)
C57BL/6NJ MGP_C57BL6NJ_G0015815
 unclassified non-coding RNA gene Chr2:60674920-60679856 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013555
 unclassified non-coding RNA gene Chr2:54228633-54233623 (-)
CAST/EiJ MGP_CASTEiJ_G0014736
 unclassified non-coding RNA gene Chr2:58325541-58330503 (-)
CBA/J MGP_CBAJ_G0015164
 unclassified non-coding RNA gene Chr2:62947796-62955471 (-)
DBA/2J MGP_DBA2J_G0015259
 unclassified non-coding RNA gene Chr2:56255175-56260247 (-)
FVB/NJ MGP_FVBNJ_G0015266
 unclassified non-coding RNA gene Chr2:55785465-55792219 (-)
LP/J MGP_LPJ_G0015339
 unclassified non-coding RNA gene Chr2:58763489-58768469 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015292
 unclassified non-coding RNA gene Chr2:64607306-64612275 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0015854
 unclassified non-coding RNA gene Chr2:58226854-58231801 (-)
PWK/PhJ MGP_PWKPhJ_G0014524
 unclassified non-coding RNA gene Chr2:56078970-56083986 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014312
 unclassified non-coding RNA gene Chr2:58294762-58299706 (-)
WSB/EiJ MGP_WSBEiJ_G0014843
 unclassified non-coding RNA gene Chr2:58509720-58514699 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Genomic Mutations
    1 involving 5330411J11Rik
  • Find Mice (IMSR)
    2 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 76676 NCBI Gene Model | MGI Sequence Detail 4190 C57BL/6J ±  kb
transcript NR_040510 RefSeq | MGI Sequence Detail 1644 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 12
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory