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1700112E06Rik
Gene Detail
Symbol

Name
ID
1700112E06Rik
RIKEN cDNA 1700112E06 gene
MGI:1923883
Synonyms
2700009F18Rik, Oca7
Feature Type
protein coding gene
Genetic Map
Chromosome 14
12.03 cM, cytoband B
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr14:22019712-23056085 bp, + strand
From VEGA annotation of GRCm38

  1036374 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:49975  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: C10orf11
Gene Tree: 1700112E06Rik

Human
homologs
C10orf11, chromosome 10 open reading frame 11
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 83938
neXtProt AC: NX_Q9H2I8

Human Synonyms: CDA017

Human Chr (Location): 10q22.3; chr10:75431458-76557375 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human C10orf11

Mutations,
alleles, and
phenotypes
All mutations/alleles(9) : Gene trapped(7) Targeted(2)
Incidental mutations (data from APF )
Interactions
1700112E06Rik interacts with 40 markers (Mir26a-2, Mir26b, Mir27b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process cell differentiation, melanocyte differentiation
Component cellular_component
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (1)    Tissues (1)    Images (1)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 1
cDNA source data(5)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(5) cDNA(5)
Microarray probesets(5)
Other database
links
VEGA Gene Model OTTMUSG00000034628 (Evidence)
Ensembl Gene Model ENSMUSG00000063458 (Evidence)
Entrez Gene 76633 (Evidence)
UniGene 489898
DFCI TC1600482, TC1589934, TC1728294, TC1678055
DoTS DT.101278911, DT.55174175, DT.99849373, DT.94166443
NIA Mouse Gene Index U015380
Consensus CDS Project CCDS49415.1
International Mouse Phenotyping Consortium Status 1700112E06Rik
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000034628 VEGA Gene Model | MGI Sequence Detail 1036374 C57BL/6J ±  kb
transcript OTTMUST00000087883 VEGA | MGI Sequence Detail 908 Not Applicable 
polypeptide OTTMUSP00000047866 VEGA | MGI Sequence Detail 229 Not Applicable 

For the selected sequences
All sequences(56) RefSeq(14) UniProt(4)
Polymorphisms
SNPs within 2kb(5417 from dbSNP Build 137)    SNPs within 2kb including multiple locations(5419)
Protein-related
information
ResourceIDDescription
InterPro IPR001611 Leucine-rich repeat
InterPro IPR003603 U2A'/phosphoprotein 32 family A, C-terminal
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(32)
Other
accession IDs
MGI:1919796

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory