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1700084C06Rik Gene Detail
Summary
  • Symbol
    1700084C06Rik
  • Name
    RIKEN cDNA 1700084C06 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1923868
    NCBI Gene: 76618
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:21003051-21039689 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 9, 7.71 cM, cytoband A3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    156 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923868
lncRNA gene Chr9:21003051-21039689 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004608
antisense lncRNA gene Chr9:18274228-18312006 (+)
A/J MGP_AJ_G0004588
antisense lncRNA gene Chr9:17973227-18010100 (+)
AKR/J MGP_AKRJ_G0004572
antisense lncRNA gene Chr9:18295002-18337929 (+)
BALB/cJ MGP_BALBcJ_G0004573
antisense lncRNA gene Chr9:17865772-17904163 (+)
C3H/HeJ MGP_C3HHeJ_G0004522
antisense lncRNA gene Chr9:18603508-18642452 (+)
C57BL/6NJ MGP_C57BL6NJ_G0004722
antisense lncRNA gene Chr9:19016200-19054929 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004173
antisense lncRNA gene Chr9:17093210-17138530 (+)
CAST/EiJ MGP_CASTEiJ_G0004480
antisense lncRNA gene Chr9:18431780-18467685 (+)
CBA/J MGP_CBAJ_G0004516
antisense lncRNA gene Chr9:19716806-19759278 (+)
DBA/2J MGP_DBA2J_G0004531
antisense lncRNA gene Chr9:17951481-17988478 (+)
FVB/NJ MGP_FVBNJ_G0004548
antisense lncRNA gene Chr9:17461886-17501524 (+)
LP/J MGP_LPJ_G0004612
antisense lncRNA gene Chr9:18447940-18486648 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0004537
antisense lncRNA gene Chr9:21339241-21377074 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0004722
antisense lncRNA gene Chr9:18240420-18282224 (+)
PWK/PhJ MGP_PWKPhJ_G0004433
antisense lncRNA gene Chr9:17925555-17962882 (+)
SPRET/EiJ MGP_SPRETEiJ_G0004373
antisense lncRNA gene Chr9:18304156-18348121 (+)
WSB/EiJ MGP_WSBEiJ_G0004521
antisense lncRNA gene Chr9:17980753-18017801 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
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  • All Sequences
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000086016 Ensembl Gene Model | MGI Sequence Detail 36639 C57BL/6J ±  kb
transcript ENSMUST00000135674 Ensembl | MGI Sequence Detail 750 Not Applicable  
polypeptide Q9CVQ5 UniProt | EBI | MGI Sequence Detail 106 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 3
References
more
  • Summaries
    All 14
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/12/2024
MGI 6.23
The Jackson Laboratory