1700041M19Rik Gene Detail

Summary

• Symbol
  1700041M19Rik
• Name
  RIKEN cDNA 1700041M19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923851
  NCBI Gene: 76601
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:76801116-76807769 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  388 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923851	lncRNA gene	Chr16:76549090-76807785 (-)
129S1/SvImJ	ENSMUSG00200016222	lncRNA gene	Chr16:73475231-73681424 (-)
A/J	ENSMUSG00195023820	lncRNA gene	Chr16:73268492-73474956 (-)
AKR/J	ENSMUSG00220017906	lncRNA gene	Chr16:73455157-73646660 (-)
BALB/cJ	ENSMUSG00180002155	lncRNA gene	Chr16:73355501-73546969 (-)
C3H/HeJ	ENSMUSG00175009402	lncRNA gene	Chr16:73638677-73830111 (-)
C57BL/6NJ	ENSMUSG00215001760	lncRNA gene	Chr16:73474921-73666378 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005156	lincRNA gene	Chr16:72182898-72189380 (-)
CAST/EiJ	ENSTCUG00005007437	lncRNA gene	Chr16:73312145-73494817 (-)
CBA/J	ENSMUSG00210019777	lncRNA gene	Chr16:73583716-73775189 (-)
DBA/2J	ENSMUSG00185005371	lncRNA gene	Chr16:73503258-73709698 (-)
FVB/NJ	ENSMUSG00205014185	lncRNA gene	Chr16:73371207-73562650 (-)
JF1/MsJ	ENSUMUG00000012215	lncRNA gene	Chr16:73666403-73856308 (-)
LP/J	ENSMUSG00230020148	lncRNA gene	Chr16:76072416-76278579 (-)
NOD/ShiLtJ	ENSMUSG00190011658	lncRNA gene	Chr16:73509936-73701369 (-)
NZO/HlLtJ	ENSMUSG00225029715	lncRNA gene	Chr16:79295555-79486025 (-)
PWK/PhJ	ENSLUMG00010005465	lncRNA gene	Chr16:73311145-73511650 (-)
SPRET/EiJ	ENSMSPG00010015103	lncRNA gene	Chr16:74165173-74353764 (-)
WSB/EiJ	ENSIUOG00005017348	lncRNA gene	Chr16:73544346-73692758 (-)

Homology

• Gene Tree
  1700041M19Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  12 phenotype references
  

• All Mutations and Alleles
  5
• Targeted
  4
• Genomic Mutations
  5 involving 1700041M19Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  1

• Ensembl
  ENSMUSG00000100857 (Evidence)
• NCBI Gene
  76601

Representative Sequences			Length	Strain/Species
genomic	76601	NCBI Gene Model | MGI Sequence Detail	6654	C57BL/6J
transcript	NR_040573	RefSeq | MGI Sequence Detail	1129	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 19

  Diseases 1

  Phenotypes 12
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:361105 Tateossian H, et al., DYRK1A kinase triplication is the major cause of Otitis Media in Down Syndrome. Elife. 2025;

TSS for 1700041M19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141825	Chr16:76807757-76807776 (-)	2 bp