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Snx7 Gene Detail
Summary
  • Symbol
    Snx7
  • Name
    sorting nexin 7
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923811
    NCBI Gene: 76561
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:117781647-117868936 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 51.21 cM, cytoband G2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    734 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923811
protein coding gene Chr3:117781497-117868936 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027824
protein coding gene Chr3:119767353-119861660 (-)
A/J MGP_AJ_G0027782
protein coding gene Chr3:115843289-115931364 (-)
AKR/J MGP_AKRJ_G0027748
protein coding gene Chr3:118759392-118853281 (-)
BALB/cJ MGP_BALBcJ_G0027794
protein coding gene Chr3:115674874-115761861 (-)
C3H/HeJ MGP_C3HHeJ_G0027525
protein coding gene Chr3:119149529-119242041 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028240
protein coding gene Chr3:124139507-124239986 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025579
protein coding gene Chr3:111453011-111541256 (-)
CAST/EiJ MGP_CASTEiJ_G0026981
protein coding gene Chr3:118452436-118551496 (-)
CBA/J MGP_CBAJ_G0027500
protein coding gene Chr3:128423745-128523466 (-)
DBA/2J MGP_DBA2J_G0027641
protein coding gene Chr3:115043922-115132599 (-)
FVB/NJ MGP_FVBNJ_G0027609
protein coding gene Chr3:112662882-112749527 (-)
LP/J MGP_LPJ_G0027751
protein coding gene Chr3:121332153-121425186 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027639
protein coding gene Chr3:135818144-135922133 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028296
protein coding gene Chr3:118312964-118400733 (-)
PWK/PhJ MGP_PWKPhJ_G0026707
protein coding gene Chr3:114695353-114787011 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026529
protein coding gene Chr3:116335046-116428820 (-)
WSB/EiJ MGP_WSBEiJ_G0027061
protein coding gene Chr3:119019458-119112307 (-)



Homology
more
  • Human Ortholog
    SNX7, sorting nexin 7
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SNX7, sorting nexin 7
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 51375
    neXtProt AC: NX_Q9UNH6
    UniProt: Q9UNH6

  • Chr Location
    1p21.3; chr1:98661344-98760500 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 22941
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SNX7
  • Gene Tree
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028007 Ensembl Gene Model | MGI Sequence Detail 87290 C57BL/6J ±  kb
transcript ENSMUST00000029639 Ensembl | MGI Sequence Detail 2021 Not Applicable  
polypeptide ENSMUSP00000029639 Ensembl | MGI Sequence Detail 445 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 22
    cDNA 22

    Microarray probesets 3
References
more
  • Summaries
    All 29
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 3
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:209428 Ragancokova D, et al., TSHZ1-dependent gene regulation is essential for olfactory bulb development and olfaction. J Clin Invest. 2014 Mar 3;124(3):1214-27

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory