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Ccdc6 Gene Detail
Summary
  • Symbol
    Ccdc6
  • Name
    coiled-coil domain containing 6
  • Synonyms
    2810012H18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923801
    NCBI Gene: 76551
  • Gene Overview
    MyGene.info: CCDC6
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:70097121-70193200 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 36.68 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    637 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923801
protein coding gene Chr10:70096878-70193200 (.)
129S1/SvImJ MGP_129S1SvImJ_G0017336
protein coding gene Chr10:70005193-70111895 (+)
A/J MGP_AJ_G0017313
protein coding gene Chr10:67633493-67728289 (+)
AKR/J MGP_AKRJ_G0017274
protein coding gene Chr10:69470314-69574903 (+)
BALB/cJ MGP_BALBcJ_G0017273
protein coding gene Chr10:67837549-67934285 (+)
C3H/HeJ MGP_C3HHeJ_G0017097
protein coding gene Chr10:69488503-69584758 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017731
protein coding gene Chr10:72536619-72647525 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015421
protein coding gene Chr10:64257431-64352656 (+)
CAST/EiJ MGP_CASTEiJ_G0016667
protein coding gene Chr10:69614594-69718647 (+)
CBA/J MGP_CBAJ_G0017069
protein coding gene Chr10:75311815-75422512 (+)
DBA/2J MGP_DBA2J_G0017174
protein coding gene Chr10:66991182-67087352 (+)
FVB/NJ MGP_FVBNJ_G0017167
protein coding gene Chr10:66162158-66259762 (+)
LP/J MGP_LPJ_G0017247
protein coding gene Chr10:70454877-70564602 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017195
protein coding gene Chr10:77443986-77551969 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017770
protein coding gene Chr10:69420164-69521106 (+)
PWK/PhJ MGP_PWKPhJ_G0016451
protein coding gene Chr10:66835256-66933424 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016233
protein coding gene Chr10:68801291-68896648 (+)
WSB/EiJ MGP_WSBEiJ_G0016731
protein coding gene Chr10:69350978-69454318 (+)



Homology
more
  • Human Ortholog
    CCDC6, coiled-coil domain containing 6
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CCDC6, coiled-coil domain containing 6
    Orthology source: HomoloGene, HGNC
  • Synonyms
    D10S170, H4, PTC, TPC, TST1
  • Links
    NCBI Gene ID: 8030
    neXtProt AC: NX_Q16204
    UniProt: Q16204

  • Chr Location
    10q21.2; chr10:59788747-59906656 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 34786
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CCDC6
  • Gene Tree
Human Diseases
less
  • Mutations/Alleles
    1 with disease annotations
  • References
    2 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotypes from multigenic genotypes
    13 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000048701 Ensembl Gene Model | MGI Sequence Detail 96080 C57BL/6J ±  kb
transcript ENSMUST00000147545 Ensembl | MGI Sequence Detail 5511 Not Applicable  
polypeptide ENSMUSP00000123374 Ensembl | MGI Sequence Detail 469 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 3
Other
Accession IDs
less
MGI:2143483, MGI:2143514, MGI:2143802
References
more
  • Summaries
    All 34
    Diseases 2
    Gene Ontology 2
    Phenotypes 13
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:236513 CledKirschner LS, et al., Mouse models of thyroid cancer: A 2015 update. Mol Cell Endocrinol. 2016 Feb 5;421:18-27

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory