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Ccdc6
Gene Detail
Symbol

Name
ID
Ccdc6
coiled-coil domain containing 6
MGI:1923801
Synonyms
2810012H18Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 10
36.68 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr10:70097121-70193200 bp, + strand
From VEGA annotation of GRCm38

  96080 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:34786  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: CCDC6
Gene Tree: Ccdc6

Human
homologs
CCDC6, coiled-coil domain containing 6
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 8030
neXtProt AC: NX_Q16204

Human Synonyms: D10S170, H4, PTC, TPC, TST1

Human Chr (Location): 10q21; chr10:59788747-59906656 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human CCDC6

Mutations,
alleles, and
phenotypes
All mutations/alleles(12) : Gene trapped(12)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Ccdc6 interacts with 400 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process biological_process
Component cytoplasm, cytoskeleton
Function SH3 domain binding
External Resources: FuncBase
Expression
cDNA source data(4)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase ccdc6 ; ZFIN ccdc6a, ccdc6b    NEW 
Molecular
reagents
All nucleic(4) cDNA(4)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000032767 (Evidence)
Ensembl Gene Model ENSMUSG00000048701 (Evidence)
Entrez Gene 76551 (Evidence)
DFCI TC1605432, TC1614810
DoTS DT.87072737
NIA Mouse Gene Index U063340
Consensus CDS Project CCDS48591.1
International Mouse Phenotyping Consortium Status Ccdc6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000032767 VEGA Gene Model | MGI Sequence Detail 96080 C57BL/6J ±  kb
transcript OTTMUST00000081576 VEGA | MGI Sequence Detail 5511 Not Applicable 
polypeptide OTTMUSP00000043662 VEGA | MGI Sequence Detail 469 Not Applicable 

For the selected sequences
All sequences(36) RefSeq(6) UniProt(3)
Polymorphisms
SNPs within 2kb(638 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR019152 Protein of unknown function DUF2046
Protein Ontology PR:000029346 coiled-coil domain-containing protein 6
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
All references(26)
Other
accession IDs
MGI:2143483, MGI:2143514, MGI:2143802

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory