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Ccdc6
Gene Detail
 Symbol
Name
ID
Ccdc6
coiled-coil domain containing 6
MGI:1923801
Synonyms 2810012H18Rik
Feature Type protein coding gene
Genetic Map
Chromosome 10
36.68 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr10:70097121-70193200 bp, + strand
From VEGA annotation of GRCm38

  96080 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:34786  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Ccdc6

Human
homologs
Human Homolog CCDC6, coiled-coil domain containing 6
NCBI Gene ID 8030
neXtProt AC  NX_Q16204
Human Synonyms  D10S170, H4, PTC, TPC, TST1
Human Chr (Location)  10q21; chr10:59788747-59906656 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human CCDC6
Alleles
and
phenotypes
All alleles(12) : Gene trapped(12)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process biological_process
Component cytoplasm, cytoskeleton
Function SH3 domain binding
External Resources: FuncBase
Expression
cDNA source data(4)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(4) cDNA(4)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000032767 (Evidence)
Ensembl Gene ModelENSMUSG00000048701 (Evidence)
Entrez Gene76551 (Evidence)
DFCITC1605432, TC1614810
DoTSDT.87072737
NIA Mouse Gene IndexU063340
Consensus CDS ProjectCCDS48591.1
International Mouse Knockout Project StatusCcdc6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000032767 VEGA Gene Model | MGI Sequence Detail 96080 C57BL/6J ±  kb
transcript OTTMUST00000081576 VEGA | MGI Sequence Detail 5511 Not Applicable 
polypeptide OTTMUSP00000043662 VEGA | MGI Sequence Detail 469 Not Applicable 

For the selected sequences
All sequences(36) RefSeq(6) UniProt(3)
Polymorphisms SNPs within 2kb(638 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR019152 Protein of unknown function DUF2046
Protein Ontology PR:000029346 coiled-coil domain-containing protein 6
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
All references(27)
Other
accession IDs
MGI:2143483, MGI:2143514, MGI:2143802

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory