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Gatc
Gene Detail
Symbol

Name
ID
Gatc
glutamyl-tRNA(Gln) amidotransferase, subunit C
MGI:1923776
Synonyms
2010003O18Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 5
56.05 cM, cytoband F
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr5:115333242-115341178 bp, - strand
From VEGA annotation of GRCm38

  7937 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:19922  Vertebrate Homology Class
1 human; 1 mouse; 2 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: GATC
Gene Tree: Gatc

Human
homologs
GATC, glutamyl-tRNA(Gln) amidotransferase, subunit C
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 283459
neXtProt AC: NX_O43716

Human Synonyms: 15E1.2

Human Chr (Location): 12q24.31; chr12:120446438-120463753 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Gatc interacts with 196 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
Expression
cDNA source data(38)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(39) Genomic(1) cDNA(38)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000014655 (Evidence)
Ensembl Gene Model ENSMUSG00000029536 (Evidence)
Entrez Gene 384281 (Evidence)
UniGene 229308
DFCI TC1612197, TC1594217, TC1581952
DoTS DT.94375599, DT.40154961
NIA Mouse Gene Index U026628
EC 6.3.5.-
Consensus CDS Project CCDS19588.1
International Mouse Phenotyping Consortium Status Gatc
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000014655 VEGA Gene Model | MGI Sequence Detail 7937 C57BL/6J ±  kb
transcript OTTMUST00000034760 VEGA | MGI Sequence Detail 1794 Not Applicable 
polypeptide OTTMUSP00000015556 VEGA | MGI Sequence Detail 155 Not Applicable 

For the selected sequences
All sequences(21) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(64 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR003837 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit
Protein Ontology PR:000007864 GatC-like protein
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(30)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory