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Lsm8 Gene Detail
Summary
  • Symbol
    Lsm8
  • Name
    LSM8 homolog, U6 small nuclear RNA associated
  • Synonyms
    2010003I05Rik, Lsm8
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923772
    NCBI Gene: 76522
  • Gene Overview
    MyGene.info: LSM8
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:18848635-18854052 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 8.16 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    84 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923772
protein coding gene Chr6:18848579-18855751 (.)
129S1/SvImJ MGP_129S1SvImJ_G0030477
protein coding gene Chr6:16165563-16172760 (+)
A/J MGP_AJ_G0030450
protein coding gene Chr6:15487081-15494253 (+)
AKR/J MGP_AKRJ_G0030377
protein coding gene Chr6:16027583-16034755 (+)
BALB/cJ MGP_BALBcJ_G0030459
protein coding gene Chr6:15590165-15597337 (+)
C3H/HeJ MGP_C3HHeJ_G0030173
protein coding gene Chr6:15897542-15904714 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030914
protein coding gene Chr6:16678306-16685478 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028125
protein coding gene Chr6:14402356-14409312 (+)
CAST/EiJ MGP_CASTEiJ_G0029575
protein coding gene Chr6:15829640-15836789 (+)
CBA/J MGP_CBAJ_G0030151
protein coding gene Chr6:17237896-17245068 (+)
DBA/2J MGP_DBA2J_G0030295
protein coding gene Chr6:15418009-15425181 (+)
FVB/NJ MGP_FVBNJ_G0030249
protein coding gene Chr6:15249974-15257146 (+)
LP/J MGP_LPJ_G0030382
protein coding gene Chr6:16235209-16242406 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030285
protein coding gene Chr6:18444711-18451883 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030944
protein coding gene Chr6:15926290-15933462 (+)
PWK/PhJ MGP_PWKPhJ_G0029289
protein coding gene Chr6:15077425-15084653 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029125
protein coding gene Chr6:15786373-15793514 (+)
WSB/EiJ MGP_WSBEiJ_G0029651
protein coding gene Chr6:15843998-15851171 (+)



Homology
more
  • Human Ortholog
    LSM8, LSM8 homolog, U6 small nuclear RNA associated
  • Vertebrate Orthologs
    11
  • Human Ortholog
    LSM8, LSM8 homolog, U6 small nuclear RNA associated
    Orthology source: HomoloGene, HGNC
  • Synonyms
    NAA38
  • Links
    NCBI Gene ID: 51691
    neXtProt AC: NX_O95777
    UniProt: O95777

  • Chr Location
    7q31.31; chr7:118184032-118204039 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 76522 NCBI Gene Model | MGI Sequence Detail 5418 C57BL/6J ±  kb
transcript NM_133939 RefSeq | MGI Sequence Detail 768 Not Specified  
polypeptide Q6ZWM4 UniProt | EBI | MGI Sequence Detail 96 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 49
    cDNA 49

    Microarray probesets 4
Other
Accession IDs
less
MGI:2141667
References
more
  • Summaries
    All 27
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265948 Cajigas I, et al., The Evf2 Ultraconserved Enhancer lncRNA Functionally and Spatially Organizes Megabase Distant Genes in the Developing Forebrain. Mol Cell. 2018 Sep 20;71(6):956-972.e9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory