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Kctd13 Gene Detail
Summary
  • Symbol
    Kctd13
  • Name
    potassium channel tetramerisation domain containing 13
  • Synonyms
    1500003N18Rik, Pdip1, Poldip1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923739
    NCBI Gene: 233877
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:126528051-126544781 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 69.25 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    73 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923739
 protein coding gene Chr7:126528051-126544803 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033008
 protein coding gene Chr7:131236251-131255963 (+)
A/J MGP_AJ_G0032991
 protein coding gene Chr7:127755756-127773308 (+)
AKR/J MGP_AKRJ_G0032923
 protein coding gene Chr7:130990693-131007402 (+)
BALB/cJ MGP_BALBcJ_G0032996
 protein coding gene Chr7:127418814-127436386 (+)
C3H/HeJ MGP_C3HHeJ_G0032706
 protein coding gene Chr7:130930174-130946874 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033502
 protein coding gene Chr7:136344548-136360999 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030474
 protein coding gene Chr7:128964702-128982536 (+)
CAST/EiJ MGP_CASTEiJ_G0032035
 protein coding gene Chr7:122717204-122735118 (+)
CBA/J MGP_CBAJ_G0032679
 protein coding gene Chr7:140929006-140947231 (+)
DBA/2J MGP_DBA2J_G0032831
 protein coding gene Chr7:125730817-125747527 (+)
FVB/NJ MGP_FVBNJ_G0032784
 protein coding gene Chr7:125580850-125597573 (+)
LP/J MGP_LPJ_G0032925
 protein coding gene Chr7:132702801-132720409 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0032816
 protein coding gene Chr7:142098226-142115040 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033521
 protein coding gene Chr7:130003928-130023046 (+)
PWK/PhJ MGP_PWKPhJ_G0031742
 protein coding gene Chr7:118725613-118742810 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031588
 protein coding gene Chr7:116845806-116862698 (+)
WSB/EiJ MGP_WSBEiJ_G0032147
 protein coding gene Chr7:130982026-130999611 (+)



Homology
more
  • Human Ortholog
    KCTD13, potassium channel tetramerization domain containing 13
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    KCTD13, potassium channel tetramerization domain containing 13
  • Synonyms
    BACURD1, FKSG86, hBACURD1, PDIP1, POLDIP1
  • Links
    NCBI Gene ID: 253980
    neXtProt AC: NX_Q8WZ19
    UniProt: Q8WZ19

  • Chr Location
    16p11.2; chr16:29905012-29926236 (-)  GRCh38
Human Diseases
less
  • References
    3 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    25 phenotypes from 2 alleles in 2 genetic backgrounds
    44 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit reduced synaptic transmission, abnormal hippocampal pyramidal neuron dendrite morphology, and hyperactivity. Another null allele shows reduced male fertility and increased incidence of cryptorchidism and micropenis.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    31
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    793
  • Tissues
    51
  • cDNA Data
    35
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 233877 NCBI Gene Model | MGI Sequence Detail 16731 C57BL/6J ±  kb
    transcript NM_172747 RefSeq | MGI Sequence Detail 1654 C57BL/6  
    polypeptide Q8BGV7 UniProt | EBI | MGI Sequence Detail 329 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      1 Sequence
    • Protein Ontology
      PR:000031144 BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1
      (term hierarchy)
    • InterPro Domains
      IPR000210 BTB/POZ domain
      IPR045068 BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1/2/3
      IPR003131 Potassium channel tetramerisation-type BTB domain
      IPR011333 SKP1/BTB/POZ domain superfamily
    Molecular
    Reagents
    less
    • All nucleic 39
      Genomic 2
      cDNA 35
      Primer pair 1
      Other 1

      Microarray probesets 6
    References
    more
    • Summaries
      All 77
      Developmental Gene Expression 4
      Diseases 3
      Gene Ontology 8
      Phenotypes 44
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:346633 Cheng J, et al., KCTD10 regulates brain development by destabilizing brain disorder-associated protein KCTD13. Proc Natl Acad Sci U S A. 2024 Mar 19;121(12):e2315707121
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/09/2024
    MGI 6.23     		The Jackson Laboratory