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Slamf9 Gene Detail
Summary
  • Symbol
    Slamf9
  • Name
    SLAM family member 9
  • Synonyms
    2310026I04Rik, Cd2f10, CD2F-10, CD84-H1, SF2001
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923692
    NCBI Gene: 98365
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:172475358-172478575 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 79.85 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    239 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923692
protein coding gene Chr1:172458569-172478575 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016788
protein coding gene Chr1:178344601-178347816 (+)
A/J MGP_AJ_G0016767
protein coding gene Chr1:171053617-171056832 (+)
AKR/J MGP_AKRJ_G0016733
protein coding gene Chr1:176216829-176220044 (+)
BALB/cJ MGP_BALBcJ_G0016728
protein coding gene Chr1:171591734-171594949 (+)
C3H/HeJ MGP_C3HHeJ_G0016552
protein coding gene Chr1:176790772-176793987 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017190
protein coding gene Chr1:184270725-184273942 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014896
protein coding gene Chr1:162746366-162749575 (+)
CAST/EiJ MGP_CASTEiJ_G0016132
protein coding gene Chr1:176159542-176162762 (+)
CBA/J MGP_CBAJ_G0016526
protein coding gene Chr1:190816486-190819701 (+)
DBA/2J MGP_DBA2J_G0016633
protein coding gene Chr1:169979185-169982400 (+)
FVB/NJ MGP_FVBNJ_G0016630
protein coding gene Chr1:168234925-168238145 (+)
LP/J MGP_LPJ_G0016704
protein coding gene Chr1:179429380-179432595 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016657
protein coding gene Chr1:198050388-198053603 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017226
protein coding gene Chr1:176086501-176089721 (+)
PWK/PhJ MGP_PWKPhJ_G0015918
protein coding gene Chr1:169360588-169363808 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015700
protein coding gene Chr1:175042916-175046130 (+)
WSB/EiJ MGP_WSBEiJ_G0016194
protein coding gene Chr1:176237714-176240929 (+)



Homology
more
  • Human Ortholog
    SLAMF9, SLAM family member 9
  • Vertebrate Orthologs
    7
  • Human Ortholog
    SLAMF9, SLAM family member 9
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CD2F10, CD2F-10, CD84H1, CD84-H1, SF2001
  • Links
    NCBI Gene ID: 89886
    neXtProt AC: NX_Q96A28
    UniProt: Q96A28

  • Chr Location
    1q23.2; chr1:159951492-159984730 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000026548 Ensembl Gene Model | MGI Sequence Detail 3218 C57BL/6J ±  kb
transcript ENSMUST00000027830 Ensembl | MGI Sequence Detail 1313 Not Applicable  
polypeptide ENSMUSP00000027830 Ensembl | MGI Sequence Detail 285 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR003599 Immunoglobulin subtype
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less
  • All nucleic 13
    cDNA 13

    Microarray probesets 4
Other
Accession IDs
less
MGI:2138260
References
more
  • Summaries
    All 35
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 10
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:229257 Gu Z, et al., Expression of the immunoglobulin superfamily cell adhesion molecules in the developing spinal cord and dorsal root ganglion. PLoS One. 2015;10(3):e0121550

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory