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Smkr-ps Pseudogene Detail
Summary
  • Symbol
    Smkr-ps
  • Name
    smal lysine rich protein 1, pseudogene
  • Synonyms
    1700023L04Rik
Location &
Maps
more
  • Sequence Map
    Chr6:29985329-29993531 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 12.39 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    104 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923669
pseudogene Chr6:29985235-29993778 (+)
129S1/SvImJ MGP_129S1SvImJ_G0006915
lincRNA gene Chr6:27825697-27833654 (+)
A/J MGP_AJ_G0006909
lincRNA gene Chr6:26641199-26649436 (+)
AKR/J MGP_AKRJ_G0006879
lincRNA gene Chr6:27514351-27522304 (+)
BALB/cJ MGP_BALBcJ_G0006885
lincRNA gene Chr6:26799234-26807238 (+)
C3H/HeJ MGP_C3HHeJ_G0006830
lincRNA gene Chr6:27523552-27534511 (+)
C57BL/6NJ MGP_C57BL6NJ_G0007050
lincRNA gene Chr6:28610012-28633696 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006297
lincRNA gene Chr6:24842932-24850865 (+)
CAST/EiJ MGP_CASTEiJ_G0006747
lincRNA gene Chr6:27325202-27336934 (+)
CBA/J MGP_CBAJ_G0006812
lincRNA gene Chr6:29694346-29705731 (+)
DBA/2J MGP_DBA2J_G0006832
lincRNA gene Chr6:26578750-26586847 (+)
FVB/NJ MGP_FVBNJ_G0006855
lincRNA gene Chr6:26334353-26343199 (+)
LP/J MGP_LPJ_G0006915
lincRNA gene Chr6:27960532-27969324 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0006836
lincRNA gene Chr6:32176416-32185332 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0007052
lincRNA gene Chr6:27403463-27411594 (+)
PWK/PhJ MGP_PWKPhJ_G0006689
lincRNA gene Chr6:26134815-26143103 (+)
SPRET/EiJ MGP_SPRETEiJ_G0006598
lincRNA gene Chr6:27128206-27135831 (+)
WSB/EiJ MGP_WSBEiJ_G0006802
lincRNA gene Chr6:27364280-27372498 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic 76419 NCBI Gene Model | MGI Sequence Detail 8203 C57BL/6J ±  kb
transcript NR_040263 RefSeq | MGI Sequence Detail 662 C57BL/6  
polypeptide Q8CF37 UniProt | EBI | MGI Sequence Detail 103 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR037760 Small lysine-rich protein 1
Molecular
Reagents
less
  • All nucleic 17
    Genomic 2
    cDNA 15

    Microarray probesets 2
References
more
  • Summaries
    All 17
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
12/03/2019
MGI 6.14
The Jackson Laboratory