About   Help   FAQ
1700001O22Rik Gene Detail
Summary
  • Symbol
    1700001O22Rik
  • Name
    RIKEN cDNA 1700001O22 gene
  • Synonyms
    1700113K14Rik, 4930549G18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923631
    NCBI Gene: 73598
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:30795563-30803729 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 21.74 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    13 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923631
protein coding gene Chr2:30794769-30803729 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025572
protein coding gene Chr2:29072438-29081329 (-)
A/J MGP_AJ_G0025550
protein coding gene Chr2:27893636-27902522 (-)
AKR/J MGP_AKRJ_G0025519
protein coding gene Chr2:28843426-28852313 (-)
BALB/cJ MGP_BALBcJ_G0025546
protein coding gene Chr2:28030814-28039705 (-)
C3H/HeJ MGP_C3HHeJ_G0025307
protein coding gene Chr2:28769706-28778597 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025991
protein coding gene Chr2:30022668-30033842 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023399
protein coding gene Chr2:26661313-26670500 (-)
CAST/EiJ MGP_CASTEiJ_G0024769
protein coding gene Chr2:28690937-28699825 (-)
CBA/J MGP_CBAJ_G0025284
protein coding gene Chr2:31066348-31075235 (-)
DBA/2J MGP_DBA2J_G0025417
protein coding gene Chr2:27676617-27685507 (-)
FVB/NJ MGP_FVBNJ_G0025380
protein coding gene Chr2:27508528-27517417 (-)
LP/J MGP_LPJ_G0025503
protein coding gene Chr2:28981958-28990842 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025410
protein coding gene Chr2:30870006-30878892 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0026049
protein coding gene Chr2:28755506-28764397 (-)
PWK/PhJ MGP_PWKPhJ_G0024516
protein coding gene Chr2:27538502-27547483 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024316
protein coding gene Chr2:28887963-28896905 (-)
WSB/EiJ MGP_WSBEiJ_G0024837
protein coding gene Chr2:28918766-28927657 (-)



Homology
more
  • Human Ortholog
    C9orf50, chromosome 9 open reading frame 50
  • Vertebrate Orthologs
    6
  • Human Ortholog
    C9orf50, chromosome 9 open reading frame 50
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 375759
    neXtProt AC: NX_Q5SZB4
    UniProt: Q5SZB4

  • Chr Location
    9q34.11; chr9:129612225-129622275 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotypes from 3 alleles in 2 genetic backgrounds
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Male mice homozygous for a null allele exhibit normal fecundity.
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 73598 NCBI Gene Model | MGI Sequence Detail 8167 C57BL/6J ±  kb
    transcript NM_198000 RefSeq | MGI Sequence Detail 1440 C57BL/6  
    polypeptide NP_932117 RefSeq | MGI Sequence Detail 375 C57BL/6  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • InterPro Domains
      IPR032756 Domain of unknown function DUF4685
    Molecular
    Reagents
    less
    • All nucleic 41
      cDNA 41

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:1920848, MGI:1925455
    References
    more
    • Summaries
      All 24
      Phenotypes 5
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:279039 Lu Y, et al., CRISPR/Cas9-mediated genome editing reveals 30 testis-enriched genes dispensable for male fertility in mice. Biol Reprod. 2019 Aug 1;101(2):501-511

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer & Copyright Notice
    Send questions and comments to User Support.
    last database update
    11/10/2020
    MGI 6.16
    The Jackson Laboratory