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Cog2
Gene Detail
 Symbol
Name
ID
Cog2
component of oligomeric golgi complex 2
MGI:1923582
Synonyms 1190002B08Rik, 2700012E02Rik, Cog2
Feature Type protein coding gene
Genetic Map
Chromosome 8
72.78 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr8:124520767-124552008 bp, + strand
From VEGA annotation of GRCm38

  31242 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:7206  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Cog2

Human
homologs
Human Homolog COG2, component of oligomeric golgi complex 2
NCBI Gene ID 22796
neXtProt AC  NX_Q14746
Human Synonyms  LDLC
Human Chr (Location)  1q42.2; chr1:230642456-230693985 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Cog2 interacts with 102 markers (Mir18b, Mir25, Mir30a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process Golgi organization, intra-Golgi vesicle-mediated transport, ...
Component cytosol, Golgi apparatus, ...
Function protein complex binding, protein transporter activity
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (24)    Tissues (15)    Images (2)
Theiler Stages: 23
Assay TypeResults
RNA in situ 24
cDNA source data(55)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(56) cDNA(56)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000023539 (Evidence)
Ensembl Gene ModelENSMUSG00000031979 (Evidence)
Entrez Gene76332 (Evidence)
UniGene240108
DFCITC1574802
DoTSDT.101347953, DT.101377787, DT.490743
NIA Mouse Gene IndexU009955
Consensus CDS ProjectCCDS22771.1
International Mouse Knockout Project StatusCog2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023539 VEGA Gene Model | MGI Sequence Detail 31242 C57BL/6J ±  kb
transcript OTTMUST00000057391 VEGA | MGI Sequence Detail 2825 Not Applicable 
polypeptide OTTMUSP00000027680 VEGA | MGI Sequence Detail 731 Not Applicable 

For the selected sequences
All sequences(54) RefSeq(4) UniProt(6)
Polymorphisms SNPs within 2kb(493 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR009316 COG complex component, COG2
InterPro IPR024603 COG complex component, COG2, C-terminal
InterPro IPR024602 Conserved oligomeric Golgi complex, subunit 2, N-terminal
Protein Ontology PR:000005685 conserved oligomeric Golgi complex subunit 2
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(35)
Other
accession IDs
MGI:1924046, MGI:2142873

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory